PointCHD:用于先天性心脏病分类和分割的点云基准。

IF 6.7 2区 医学 Q1 COMPUTER SCIENCE, INFORMATION SYSTEMS IEEE Journal of Biomedical and Health Informatics Pub Date : 2024-11-08 DOI:10.1109/JBHI.2024.3495035
Dinghao Yang, Wei Gao
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引用次数: 0

摘要

先天性心脏病(CHD)是最常见的出生缺陷之一。随着医学影像分析技术的发展,针对先天性心脏病的医学影像分析已成为一个重要的研究方向。由于数据缺乏和标记困难,CHD 数据集非常稀少。以往的研究主要集中在 CT 和其他医学影像模式上,而点云的研究尚属空白。作为三维数据的代表类型,点云可以直观地模拟器官形状,在医学分析中具有明显优势,可以帮助医生进行诊断。然而,医学点云数据集的生成比图像数据集更为复杂,内脏器官的三维建模需要通过高精度仪器扫描后重建。我们提出的 PointCHD 是首个用于心脏病诊断的点云数据集,其中包含大量高精度标注和广泛分类的数据。PointCHD 包含不同类型、不同失真度的三维数据,支持多种分析任务,如分类、分割、重建等。我们还以医疗诊断为目标,在 PointCHD 上构建了一个基准,设计了分析流程,并比较了主流点云分析方法的性能。针对心脏点云复杂的内外部结构,我们提出了一种基于流形学习的点云表示学习方法。通过引入法线考虑曲面的连续性来构建流形学习方法的自适应投影面,充分提取了心脏的结构特征,并在 PointCHD 基准的各项任务中取得了最佳性能。最后,我们总结了 CHD 点云分析中存在的问题,并对未来潜在的研究方向进行了展望。该基准即将发布。
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PointCHD: A Point Cloud Benchmark for Congenital Heart Disease Classification and Segmentation.

Congenital heart disease (CHD) is one of the most common birth defects. With the development of medical imaging analysis technology, medical image analysis for CHD has become an important research direction. Due to the lack of data and the difficulty of labeling, CHD datasets are scarce. Previous studies focused on CT and other medical image modes, while point cloud is still unstudied. As a representative type of 3D data, point cloud can intuitively model organ shapes, which has obvious advantages in medical analysis and can assist doctors in diagnosis. However, the production of a medical point cloud dataset is more complex than that of an image dataset, and the 3D modeling of internal organs needs to be reconstructed after scanning by high-precision instruments. We propose PointCHD, the first point cloud dataset for CHD diagnosis, with a large number of high precision-annotated and wide-categorized data. PointCHD includes different types of three-dimensional data with varying degrees of distortion, and supports multiple analysis tasks, i.e. classification, segmentation, reconstruction, etc. We also construct a benchmark on PointCHD with the goal of medical diagnosis, we design the analysis process and compare the performances of the mainstream point cloud analysis methods. In view of the complex internal and external structure of the heart point cloud, we propose a point cloud representation learning method based on manifold learning. By introducing normal lines to consider the continuity of the surface to construct a manifold learning method of the adaptive projection plane, fully extracted the structural features of the heart, and achieved the best performance on each task of the PointCHD benchmark. Finally, we summarize the existing problems in the analysis of the CHD point cloud and prospects for potential research directions in the future. The benchmark will be released soon.

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来源期刊
IEEE Journal of Biomedical and Health Informatics
IEEE Journal of Biomedical and Health Informatics COMPUTER SCIENCE, INFORMATION SYSTEMS-COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
CiteScore
13.60
自引率
6.50%
发文量
1151
期刊介绍: IEEE Journal of Biomedical and Health Informatics publishes original papers presenting recent advances where information and communication technologies intersect with health, healthcare, life sciences, and biomedicine. Topics include acquisition, transmission, storage, retrieval, management, and analysis of biomedical and health information. The journal covers applications of information technologies in healthcare, patient monitoring, preventive care, early disease diagnosis, therapy discovery, and personalized treatment protocols. It explores electronic medical and health records, clinical information systems, decision support systems, medical and biological imaging informatics, wearable systems, body area/sensor networks, and more. Integration-related topics like interoperability, evidence-based medicine, and secure patient data are also addressed.
期刊最新文献
Advancing In Silico Clinical Trials for Regulatory Adoption and Innovation. In Silico Modeling and Validation of the Effect of Calcium-Activated Potassium Current on Ventricular Repolarization in Failing Myocytes. PointCHD: A Point Cloud Benchmark for Congenital Heart Disease Classification and Segmentation. Zero-Shot Medical Phrase Grounding with Off-the-shelf Diffusion Models. Incremental Classification for High-Dimensional EEG Manifold Representation Using Bidirectional Dimensionality Reduction and Prototype Learning.
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