揭示烷基没食子酸酯的抗氧化特性:通过量子化学计算和分子对接的新方法。

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Molecular Modeling Pub Date : 2024-11-15 DOI:10.1007/s00894-024-06196-5
Nihat Karakuş
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引用次数: 0

摘要

背景:本研究调查了烷基没食子酸盐(C1-C10)的抗氧化潜力,重点研究了烷基链长和溶剂极性对其抗氧化特性的影响。烷基没食子酸盐在减轻氧化应激方面具有生物医学意义,但其结构-活性关系,尤其是链长和环境因素方面的关系仍有待探索。关键热化学参数(包括键解离焓(BDE)、电离电位(IP)、质子亲和力(PA)和电子转移焓(ETE))显示,较短的烷基链(C1-C4)表现出卓越的抗氧化活性。相比之下,较长的烷基链(C5-C10)由于立体阻碍和在极性溶剂中的溶解度较低,其抗氧化活性有所降低。分子对接研究还表明,这些化合物与重要的生物靶标具有良好的结合相互作用,进一步增强了它们的抗氧化潜力:量子化学计算采用高斯 16 和 B3LYP/6-311G(dp) 基集进行几何优化。溶剂效应采用积分方程形式主义-极化连续模型(IEF-PCM)建模。使用 AutoDockTools 4.2 进行了分子对接研究,以酪氨酸激酶 Hck、血红蛋白氧合酶和人血清白蛋白为目标,评估基本的结合相互作用。这些计算方法有助于深入了解没食子酸烷基酯的化学反应性和抗氧化效率,从而合理地设计出更有效的抗氧化化合物。
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Revealing the antioxidant properties of alkyl gallates: a novel approach through quantum chemical calculations and molecular docking

Context

This study investigates the antioxidant potential of alkyl gallates (C1-C10), focusing on the impact of alkyl chain length and solvent polarity on their antioxidant properties. Known for their biomedical relevance in mitigating oxidative stress, alkyl gallates' structure–activity relationships, particularly regarding chain length and environmental factors, still need to be explored. Key thermochemical parameters, including bond dissociation enthalpy (BDE), ionization potential (IP), proton affinity (PA), and electron transfer enthalpy (ETE), reveal that shorter alkyl chains (C1-C4) exhibit superior antioxidant activity. In contrast, longer chains (C5-C10) show reduced effectiveness due to steric hindrance and lower solubility in polar solvents. Molecular docking studies also demonstrated favorable binding interactions with vital biological targets, further reinforcing their antioxidant potential.

Methods

Quantum chemical calculations were performed using Gaussian 16 with the B3LYP/6-311G(dp) basis set for geometry optimizations. Solvent effects were modeled using the integral equation formalism-polarized continuum model (IEF-PCM). Molecular docking studies were conducted using AutoDockTools 4.2, targeting Tyrosine Kinase Hck, Heme Oxygenase, and Human Serum Albumin to evaluate fundamental binding interactions. These computational methods provided insights into alkyl gallates' chemical reactivity and antioxidant efficiency, allowing for the rational design of more potent antioxidant compounds.

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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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