在呼吸道致敏的量子力学预测模型中捕捉实验证据的质量差异

IF 3.7 3区 医学 Q2 CHEMISTRY, MEDICINAL Chemical Research in Toxicology Pub Date : 2024-11-14 DOI:10.1021/acs.chemrestox.4c00289
Jakub Kostal, Joshua Vaughan, Kamila Blum, Adelina Voutchkova-Kostal
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引用次数: 0

摘要

哮喘是职业毒理学关注的问题,会造成巨大的公共卫生和经济损失。在缺乏基准体内和体外测试的情况下,使用机理上合理的硅学模型对于告知危害和保护工人免于接触潜在有害物质至关重要。我们最近报道了呼吸道致敏计算机辅助发现和再设计(CADRE)模型,该模型依靠专家规则、分子模拟、量子力学计算和高级统计的分层结构,从第一原理出发准确识别呼吸道致敏物质。在此,我们根据两年来在制药领域的测试结果,对这一模型进行了更新,在两个预测层级中捕捉了基础实验证据的异质性,从而使从业人员能够根据他们对数据可靠性和相关性的专业评估来选择结果。这种基于用户的预测模型调整对于终端至关重要,因为在处理化学品的职业安全问题时,对于什么是支持决策的令人满意的证据缺乏共识。
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Capturing Differential Quality of Experimental Evidence in a Predictive Quantum-Mechanical Model for Respiratory Sensitization.

Asthma is of concern in occupational toxicology with significant public-health and economic costs. In the absence of benchmark in vivo and in vitro tests, the use of mechanistically sound in silico models is critical to inform hazard and to protect workers from exposure to potentially harmful substances. We recently reported on the computer-aided discovery and REdesign (CADRE) model for respiratory sensitization, which relies on a tiered structure of expert rules, molecular simulations, quantum-mechanics calculations and advanced statistics to accurately identify respiratory sensitizers from first principles. Here, we present an update to this model based on two years of testing in the pharmaceutical space, where we captured the heterogeneity of the underlying experimental evidence in two predictive tiers, thus allowing the practitioner to select an outcome based on their expert assessment of the data reliability and relevance. This user-based tuning of predictive models is critical for end points that lack consensus on what constitutes satisfactory evidence to support a decision in the handling of chemicals for occupational safety.

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来源期刊
CiteScore
7.90
自引率
7.30%
发文量
215
审稿时长
3.5 months
期刊介绍: Chemical Research in Toxicology publishes Articles, Rapid Reports, Chemical Profiles, Reviews, Perspectives, Letters to the Editor, and ToxWatch on a wide range of topics in Toxicology that inform a chemical and molecular understanding and capacity to predict biological outcomes on the basis of structures and processes. The overarching goal of activities reported in the Journal are to provide knowledge and innovative approaches needed to promote intelligent solutions for human safety and ecosystem preservation. The journal emphasizes insight concerning mechanisms of toxicity over phenomenological observations. It upholds rigorous chemical, physical and mathematical standards for characterization and application of modern techniques.
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