利用深共晶溶剂在生物催化中的潜力:以二氧化碳还原甲酸盐为例的设计策略。

IF 3.8 3区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Frontiers in Chemistry Pub Date : 2024-10-25 eCollection Date: 2024-01-01 DOI:10.3389/fchem.2024.1467810
Marijan Logarušić, Karla Šubar, Maja Nikolić, Ana Jurinjak Tušek, Anja Damjanović, Mia Radović, Ivana Radojčić Redovniković, Polona Žnidaršič-Plazl, Wolfgang Kroutil, Marina Cvjetko Bubalo
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引用次数: 0

摘要

简介:深共晶溶剂(DES)已成为具有多种用途的绿色溶剂,在生物催化方面显示出巨大的潜力。它们通常能提高水溶性差的底物的溶解度,作为智能辅助底物,调节酶的立体选择性,并有可能提高酶的活性和稳定性。尽管具有这些优点,但筛选最佳 DES 和确定特定生物催化反应的适当含水量仍然是一个复杂而耗时的过程,是一项重大挑战:本文讨论了在溶剂特性和工艺限制所确定的性能目标的指导下,通过实验筛选和计算工具的结合,合理设计适合特定生物催化系统的 DES。依赖 NADH 的甲酸脱氢酶 (FDH) 催化 CO2 还原成甲酸盐的过程证明了这种方法的有效性。通过系统分析 FDH 的活性和稳定性、NADH 的稳定性(溶剂饱和 CO2 后的长期和短期稳定性)以及最初选定的甘油基 DES 中 CO2 的可溶性,我们能够巧妙地指导 DES 的筛选过程:考虑到通过实验确定的 DES 性能指标之间的权衡,氯化胆碱:甘油在磷酸盐缓冲液中的 20% 溶液(ChCl:Gly80%B)被确定为最适合特定反应的溶剂系统。与参考缓冲液相比,使用 ChCl:Gly 作为辅助溶剂可使 FDH 的半衰期延长近 15 倍,并在加入 CO2 后稳定辅酶。此外,与参考缓冲液相比,在缓冲液中添加 20% 的 ChCl:Gly 可提高批处理系统中 FDH 催化二氧化碳还原的体积生产率。酶在这种共溶剂体系中的超强稳定性显示了其在连续操作中的巨大应用潜力,这将显著提高工艺生产率。此外,根据易于测量的溶剂理化性质和从 COSMO-RS 中获得的分子描述符,建立了 QSAR 模型,成功预测了酶活性和稳定性以及辅酶在含有 DESs 的选定溶剂体系中的稳定性。
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Harnessing the potential of deep eutectic solvents in biocatalysis: design strategies using CO2 to formate reduction as a case study.

Introduction: Deep eutectic solvents (DESs) have emerged as green solvents with versatile applications, demonstrating significant potential in biocatalysis. They often increase the solubility of poorly water-soluble substrates, serve as smart co-substrates, modulate enzyme stereoselectivity, and potentially improve enzyme activity and stability. Despite these advantages, screening for an optimal DES and determining the appropriate water content for a given biocatalytic reaction remains a complex and time-consuming process, posing a significant challenge.

Methods: This paper discusses the rational design of DES tailored to a given biocatalytic system through a combination of experimental screening and computational tools, guided by performance targets defined by solvent properties and process constraints. The efficacy of this approach is demonstrated by the reduction of CO2 to formate catalyzed by NADH-dependent formate dehydrogenase (FDH). By systematically analyzing FDH activity and stability, NADH stability (both long-term and short-term stability after solvent saturation with CO2), and CO2 solubility in initially selected glycerol-based DESs, we were able to skillfully guide the DES screening process.

Results and discussion: Considering trade-offs between experimentally determined performance metrics of DESs, 20% solution of choline chloride:glycerol in phosphate buffer (ChCl:Gly80%B) was identified as the most promising solvent system for a given reaction. Using ChCl:Gly as a co-solvent resulted in an almost 15-fold increase in FDH half-life compared to the reference buffer and stabilized the coenzyme after the addition of CO2. Moreover, the 20% addition of ChCl:Gly to the buffer improved the volumetric productivity of FDH-catalyzed CO2 reduction in a batch system compared to the reference buffer. The exceptional stability of the enzyme in this co-solvent system shows great potential for application in continuous operation, which can significantly improve process productivity. Additionally, based on easily measurable physicochemical solvent properties and molecular descriptors derived from COSMO-RS, QSAR models were developed, which successfully predicted enzyme activity and stability, as well as coenzyme stability in selected solvent systems with DESs.

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来源期刊
Frontiers in Chemistry
Frontiers in Chemistry Chemistry-General Chemistry
CiteScore
8.50
自引率
3.60%
发文量
1540
审稿时长
12 weeks
期刊介绍: Frontiers in Chemistry is a high visiblity and quality journal, publishing rigorously peer-reviewed research across the chemical sciences. Field Chief Editor Steve Suib at the University of Connecticut is supported by an outstanding Editorial Board of international researchers. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to academics, industry leaders and the public worldwide. Chemistry is a branch of science that is linked to all other main fields of research. The omnipresence of Chemistry is apparent in our everyday lives from the electronic devices that we all use to communicate, to foods we eat, to our health and well-being, to the different forms of energy that we use. While there are many subtopics and specialties of Chemistry, the fundamental link in all these areas is how atoms, ions, and molecules come together and come apart in what some have come to call the “dance of life”. All specialty sections of Frontiers in Chemistry are open-access with the goal of publishing outstanding research publications, review articles, commentaries, and ideas about various aspects of Chemistry. The past forms of publication often have specific subdisciplines, most commonly of analytical, inorganic, organic and physical chemistries, but these days those lines and boxes are quite blurry and the silos of those disciplines appear to be eroding. Chemistry is important to both fundamental and applied areas of research and manufacturing, and indeed the outlines of academic versus industrial research are also often artificial. Collaborative research across all specialty areas of Chemistry is highly encouraged and supported as we move forward. These are exciting times and the field of Chemistry is an important and significant contributor to our collective knowledge.
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