无序蛋白质与化学环境相互作用,在干燥过程中调整其保护功能。

IF 6.4 1区 生物学 Q1 BIOLOGY eLife Pub Date : 2024-11-19 DOI:10.7554/eLife.97231
Shraddha Kc, Kenny H Nguyen, Vincent Nicholson, Annie Walgren, Tony Trent, Edith Gollub, Paulette Sofia Romero-Perez, Alex S Holehouse, Shahar Sukenik, Thomas C Boothby
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引用次数: 0

摘要

固有无序蛋白(IDPs)的构象组合和功能对其溶液环境非常敏感。无序蛋白固有的延展性,加上其残基的暴露,是造成这种敏感性的原因。在干燥(极端干燥)过程中,IDPs 在细胞内环境发生巨大变化的同时发挥着重要作用。长期以来,生物体在干燥过程中的生存能力一直与大量共溶质(如三卤糖或蔗糖)的积累以及 IDPs(如胚胎发生后期丰富蛋白(LEA)或细胞质丰富热溶蛋白(CAHS))的富集有关。尽管人们知道 IDPs 在干燥过程中发挥重要作用,并与内源性、物种特异性共溶质共同富集,但对于 IDP 与共溶质之间的相互作用如何从机理上影响干燥耐受性却知之甚少。在这里,我们检验了与干燥相关的 IDPs 的保护功能是通过内源共溶质诱导的构象变化而增强的这一观点。我们发现,来自四种不同生物体的与干燥相关的 IDPs(跨越两个 LEA 蛋白家族和 CAHS 蛋白家族)在干燥过程中与内源共溶质的协同作用最佳,可促进干燥保护。然而,保护性 IDP 的结构参数与 CAHS 或 LEA 蛋白的协同作用并不相关。我们进一步证明,对于 CAHS 而非 LEA 蛋白来说,协同作用与自组装和凝胶的形成有关。我们的研究结果表明,IDPs 与内源共溶质之间的功能协同作用是不同 IDP 家族和生物体之间的一种趋同的干燥保护策略,但不同 IDP 家族之间的协同作用机制却不尽相同。
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Disordered proteins interact with the chemical environment to tune their protective function during drying.

The conformational ensemble and function of intrinsically disordered proteins (IDPs) are sensitive to their solution environment. The inherent malleability of disordered proteins, combined with the exposure of their residues, accounts for this sensitivity. One context in which IDPs play important roles that are concomitant with massive changes to the intracellular environment is during desiccation (extreme drying). The ability of organisms to survive desiccation has long been linked to the accumulation of high levels of cosolutes such as trehalose or sucrose as well as the enrichment of IDPs, such as late embryogenesis abundant (LEA) proteins or cytoplasmic abundant heat-soluble (CAHS) proteins. Despite knowing that IDPs play important roles and are co-enriched alongside endogenous, species-specific cosolutes during desiccation, little is known mechanistically about how IDP-cosolute interactions influence desiccation tolerance. Here, we test the notion that the protective function of desiccation-related IDPs is enhanced through conformational changes induced by endogenous cosolutes. We find that desiccation-related IDPs derived from four different organisms spanning two LEA protein families and the CAHS protein family synergize best with endogenous cosolutes during drying to promote desiccation protection. Yet the structural parameters of protective IDPs do not correlate with synergy for either CAHS or LEA proteins. We further demonstrate that for CAHS, but not LEA proteins, synergy is related to self-assembly and the formation of a gel. Our results suggest that functional synergy between IDPs and endogenous cosolutes is a convergent desiccation protection strategy seen among different IDP families and organisms, yet the mechanisms underlying this synergy differ between IDP families.

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来源期刊
eLife
eLife BIOLOGY-
CiteScore
12.90
自引率
3.90%
发文量
3122
审稿时长
17 weeks
期刊介绍: eLife is a distinguished, not-for-profit, peer-reviewed open access scientific journal that specializes in the fields of biomedical and life sciences. eLife is known for its selective publication process, which includes a variety of article types such as: Research Articles: Detailed reports of original research findings. Short Reports: Concise presentations of significant findings that do not warrant a full-length research article. Tools and Resources: Descriptions of new tools, technologies, or resources that facilitate scientific research. Research Advances: Brief reports on significant scientific advancements that have immediate implications for the field. Scientific Correspondence: Short communications that comment on or provide additional information related to published articles. Review Articles: Comprehensive overviews of a specific topic or field within the life sciences.
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