Snežana D Zarić, Sonja S Zrilić, Dragan B Ninković, Mihajlo Etinski
{"title":"配位甘氨酸与水分子氢键的扰动和变异能量分解分析。","authors":"Snežana D Zarić, Sonja S Zrilić, Dragan B Ninković, Mihajlo Etinski","doi":"10.1002/cphc.202400948","DOIUrl":null,"url":null,"abstract":"<p><p>Three types of hydrogen bonds of coordinated glycine and water had been investigated: NH/O of α-amino group, O1/HO involving oxygen coordinated to the metal ion (O1), and O2/HO involving α-carbonyl oxygen (O2). Various glycine complexes were investigated: octahedral cobalt(III) and nickel(II), square pyramidal copper(II), and square planar copper(II), palladium(II), and platinum(II) complexes. Nature of these three hydrogen bond types was analysed using symmetry-adapted perturbation theory (SAPT) and variational energy decomposition analysis (EDA) method (TPSS-D3/def2-TZVPP). The results of the EDA decomposition are in good agreement with the reliable SAPT2+3/def2-TZVPP and its total interaction values with CCSD(T)/CBS energies. Electrostatic interaction is generally the dominant attractive energy term in most of the interactions, followed by orbital relaxation, and lastly dispersion as the weakest. We compared EDA results of various complexes to determine the effects of complex charge, metal oxidation, coordination, and atomic number on the energy decomposition terms. The complex charge influences the values of decomposition terms the most, followed by metal oxidation and coordination number, while atomic number effects them the least. All complex and metal changes have a more significant effect on the results of NH/O and O1/HO then O2/HO interactions, due to its location further away from the metal ion.</p>","PeriodicalId":9819,"journal":{"name":"Chemphyschem","volume":" ","pages":"e202400948"},"PeriodicalIF":2.3000,"publicationDate":"2024-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Perturbational and variational energy decomposition analysis on hydrogen bonds of coordinated glycine with water molecule.\",\"authors\":\"Snežana D Zarić, Sonja S Zrilić, Dragan B Ninković, Mihajlo Etinski\",\"doi\":\"10.1002/cphc.202400948\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Three types of hydrogen bonds of coordinated glycine and water had been investigated: NH/O of α-amino group, O1/HO involving oxygen coordinated to the metal ion (O1), and O2/HO involving α-carbonyl oxygen (O2). Various glycine complexes were investigated: octahedral cobalt(III) and nickel(II), square pyramidal copper(II), and square planar copper(II), palladium(II), and platinum(II) complexes. Nature of these three hydrogen bond types was analysed using symmetry-adapted perturbation theory (SAPT) and variational energy decomposition analysis (EDA) method (TPSS-D3/def2-TZVPP). The results of the EDA decomposition are in good agreement with the reliable SAPT2+3/def2-TZVPP and its total interaction values with CCSD(T)/CBS energies. Electrostatic interaction is generally the dominant attractive energy term in most of the interactions, followed by orbital relaxation, and lastly dispersion as the weakest. We compared EDA results of various complexes to determine the effects of complex charge, metal oxidation, coordination, and atomic number on the energy decomposition terms. The complex charge influences the values of decomposition terms the most, followed by metal oxidation and coordination number, while atomic number effects them the least. All complex and metal changes have a more significant effect on the results of NH/O and O1/HO then O2/HO interactions, due to its location further away from the metal ion.</p>\",\"PeriodicalId\":9819,\"journal\":{\"name\":\"Chemphyschem\",\"volume\":\" \",\"pages\":\"e202400948\"},\"PeriodicalIF\":2.3000,\"publicationDate\":\"2024-11-20\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Chemphyschem\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1002/cphc.202400948\",\"RegionNum\":3,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Chemphyschem","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1002/cphc.202400948","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Perturbational and variational energy decomposition analysis on hydrogen bonds of coordinated glycine with water molecule.
Three types of hydrogen bonds of coordinated glycine and water had been investigated: NH/O of α-amino group, O1/HO involving oxygen coordinated to the metal ion (O1), and O2/HO involving α-carbonyl oxygen (O2). Various glycine complexes were investigated: octahedral cobalt(III) and nickel(II), square pyramidal copper(II), and square planar copper(II), palladium(II), and platinum(II) complexes. Nature of these three hydrogen bond types was analysed using symmetry-adapted perturbation theory (SAPT) and variational energy decomposition analysis (EDA) method (TPSS-D3/def2-TZVPP). The results of the EDA decomposition are in good agreement with the reliable SAPT2+3/def2-TZVPP and its total interaction values with CCSD(T)/CBS energies. Electrostatic interaction is generally the dominant attractive energy term in most of the interactions, followed by orbital relaxation, and lastly dispersion as the weakest. We compared EDA results of various complexes to determine the effects of complex charge, metal oxidation, coordination, and atomic number on the energy decomposition terms. The complex charge influences the values of decomposition terms the most, followed by metal oxidation and coordination number, while atomic number effects them the least. All complex and metal changes have a more significant effect on the results of NH/O and O1/HO then O2/HO interactions, due to its location further away from the metal ion.
期刊介绍:
ChemPhysChem is one of the leading chemistry/physics interdisciplinary journals (ISI Impact Factor 2018: 3.077) for physical chemistry and chemical physics. It is published on behalf of Chemistry Europe, an association of 16 European chemical societies.
ChemPhysChem is an international source for important primary and critical secondary information across the whole field of physical chemistry and chemical physics. It integrates this wide and flourishing field ranging from Solid State and Soft-Matter Research, Electro- and Photochemistry, Femtochemistry and Nanotechnology, Complex Systems, Single-Molecule Research, Clusters and Colloids, Catalysis and Surface Science, Biophysics and Physical Biochemistry, Atmospheric and Environmental Chemistry, and many more topics. ChemPhysChem is peer-reviewed.