稀土元素标示的启示:通过 DFT 计算揭开硫酸盐和水解络合物的神秘面纱

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Molecular Modeling Pub Date : 2024-11-23 DOI:10.1007/s00894-024-06213-7
Alexandre C. Bertoli, Pedro A. A. Novaes, Luciano T. Costa, Wagner B. De Almeida, Hélio A. Duarte
{"title":"稀土元素标示的启示:通过 DFT 计算揭开硫酸盐和水解络合物的神秘面纱","authors":"Alexandre C. Bertoli,&nbsp;Pedro A. A. Novaes,&nbsp;Luciano T. Costa,&nbsp;Wagner B. De Almeida,&nbsp;Hélio A. Duarte","doi":"10.1007/s00894-024-06213-7","DOIUrl":null,"url":null,"abstract":"<div><h3>Context</h3><p>Rare earth elements (REE) are indispensable in numerous green technologies owing to their exceptional physical and chemical attributes. Separating REE is a pivotal process to meet the increasing demands of the high-tech industry. Understanding the hydrolysis of REE in aqueous environments marks the initial stride in comprehending their separation mechanisms. Sulfate commonly coexists in high-concentration solutions alongside REE, stemming from mineral processing. We analyzed the hydrolysis of REE and their complexes with sulfate using DFT methods. We present and discuss on the structural characteristics of hydrolysis species and sulfate complexes in alignment with existing experimental data. Estimates of Gibbs free energies for hydrolysis and sulfate complex formation were compared against literature values. REE pose challenges owing to the labile nature of aqua complexes and the pivotal role of system dynamics. We showed that hydrolysis reactions could be suitably modeled, yielding an error margin of approximately 5 kcal mol<sup>−1</sup> concerning experimental values, employing the M06 exchange–correlation functional with the SMD implicit solvation model. However, sulfate chemical species proved to be more challenging, exhibiting larger error margins with substantial variations across the REE series. The Raman spectrum analysis of lanthanum sulfate complexes demonstrated excellent agreement with experimental values.</p><h3>Method</h3><p>We applied the M06, PBE, and PBE0 exchange–correlation functionals combined with def2-TZVP basis sets and SMD to obtain the Gibbs free energies of hydrolysis and sulfate complexation with lanthanides in aqueous solution. The calculations were performed using the ORCA program.</p><h3>Graphical Abstract</h3>\n<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>","PeriodicalId":651,"journal":{"name":"Journal of Molecular Modeling","volume":"30 12","pages":""},"PeriodicalIF":2.1000,"publicationDate":"2024-11-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Insights into rare earth element speciation: unraveling sulfate and hydrolysis complexes through DFT calculations\",\"authors\":\"Alexandre C. Bertoli,&nbsp;Pedro A. A. Novaes,&nbsp;Luciano T. Costa,&nbsp;Wagner B. De Almeida,&nbsp;Hélio A. Duarte\",\"doi\":\"10.1007/s00894-024-06213-7\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Context</h3><p>Rare earth elements (REE) are indispensable in numerous green technologies owing to their exceptional physical and chemical attributes. Separating REE is a pivotal process to meet the increasing demands of the high-tech industry. Understanding the hydrolysis of REE in aqueous environments marks the initial stride in comprehending their separation mechanisms. Sulfate commonly coexists in high-concentration solutions alongside REE, stemming from mineral processing. We analyzed the hydrolysis of REE and their complexes with sulfate using DFT methods. We present and discuss on the structural characteristics of hydrolysis species and sulfate complexes in alignment with existing experimental data. Estimates of Gibbs free energies for hydrolysis and sulfate complex formation were compared against literature values. REE pose challenges owing to the labile nature of aqua complexes and the pivotal role of system dynamics. We showed that hydrolysis reactions could be suitably modeled, yielding an error margin of approximately 5 kcal mol<sup>−1</sup> concerning experimental values, employing the M06 exchange–correlation functional with the SMD implicit solvation model. However, sulfate chemical species proved to be more challenging, exhibiting larger error margins with substantial variations across the REE series. The Raman spectrum analysis of lanthanum sulfate complexes demonstrated excellent agreement with experimental values.</p><h3>Method</h3><p>We applied the M06, PBE, and PBE0 exchange–correlation functionals combined with def2-TZVP basis sets and SMD to obtain the Gibbs free energies of hydrolysis and sulfate complexation with lanthanides in aqueous solution. The calculations were performed using the ORCA program.</p><h3>Graphical Abstract</h3>\\n<div><figure><div><div><picture><source><img></source></picture></div></div></figure></div></div>\",\"PeriodicalId\":651,\"journal\":{\"name\":\"Journal of Molecular Modeling\",\"volume\":\"30 12\",\"pages\":\"\"},\"PeriodicalIF\":2.1000,\"publicationDate\":\"2024-11-23\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Molecular Modeling\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s00894-024-06213-7\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Molecular Modeling","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s00894-024-06213-7","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0

摘要

背景稀土元素(REE)因其特殊的物理和化学属性,在众多绿色技术中不可或缺。分离稀土元素是满足高科技产业日益增长的需求的关键过程。了解 REE 在水环境中的水解过程是理解其分离机制的第一步。硫酸盐通常与 REE 同时存在于高浓度溶液中,这源于矿物加工。我们采用 DFT 方法分析了 REE 及其与硫酸盐的复合物的水解过程。我们结合现有的实验数据,介绍并讨论了水解物种和硫酸盐复合物的结构特征。水解和硫酸盐络合物形成的吉布斯自由能估计值与文献值进行了比较。由于水络合物的易变性和系统动力学的关键作用,REE 提出了挑战。我们的研究表明,利用 M06 交换相关函数和 SMD 隐式溶解模型,可以对水解反应进行适当建模,与实验值的误差约为 5 kcal mol-1。然而,事实证明硫酸盐化学物种更具挑战性,在整个 REE 系列中表现出更大的误差范围和巨大的差异。我们应用 M06、PBE 和 PBE0 交换相关函数,结合 def2-TZVP 基集和 SMD,获得了水溶液中镧系元素水解和硫酸盐络合的吉布斯自由能。计算使用 ORCA 程序进行。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Insights into rare earth element speciation: unraveling sulfate and hydrolysis complexes through DFT calculations

Context

Rare earth elements (REE) are indispensable in numerous green technologies owing to their exceptional physical and chemical attributes. Separating REE is a pivotal process to meet the increasing demands of the high-tech industry. Understanding the hydrolysis of REE in aqueous environments marks the initial stride in comprehending their separation mechanisms. Sulfate commonly coexists in high-concentration solutions alongside REE, stemming from mineral processing. We analyzed the hydrolysis of REE and their complexes with sulfate using DFT methods. We present and discuss on the structural characteristics of hydrolysis species and sulfate complexes in alignment with existing experimental data. Estimates of Gibbs free energies for hydrolysis and sulfate complex formation were compared against literature values. REE pose challenges owing to the labile nature of aqua complexes and the pivotal role of system dynamics. We showed that hydrolysis reactions could be suitably modeled, yielding an error margin of approximately 5 kcal mol−1 concerning experimental values, employing the M06 exchange–correlation functional with the SMD implicit solvation model. However, sulfate chemical species proved to be more challenging, exhibiting larger error margins with substantial variations across the REE series. The Raman spectrum analysis of lanthanum sulfate complexes demonstrated excellent agreement with experimental values.

Method

We applied the M06, PBE, and PBE0 exchange–correlation functionals combined with def2-TZVP basis sets and SMD to obtain the Gibbs free energies of hydrolysis and sulfate complexation with lanthanides in aqueous solution. The calculations were performed using the ORCA program.

Graphical Abstract

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
期刊最新文献
Insight into the structural and dynamic properties of novel HSP90 inhibitors through DFT calculations and molecular dynamics simulations Improved energy equations and thermal functions for diatomic molecules: a generalized fractional derivative approach NO2 properties that affect its reaction with pristine and Pt-doped SnS2: a gas sensor study Theoretical study of the synergistic effect between glyceryl monooleate lubricant and carboxymethylcellulose in reducing the coefficient of friction of water-based drilling fluids Constructing, in silico, molecular self-aggregates and micro-hydrated complexes of oxirene and thiirene
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1