Derya Demir, Kutsev Bengisu Ozyoruk, Yasin Durusoy, Ezgi Cinar, Gurdeniz Serin, Kayhan Basak, Emre Cagatay Kose, Malik Ergin, Murat Sezak, G Evren Keles, Sergulen Dervisoglu, Basak Doganavsargil Yakut, Yavuz Nuri Ertas, Feras Alaqad, Mehmet Turan
{"title":"手术诊断的未来:用人工智能增强神经节细胞检测赫氏腓肠肌病。","authors":"Derya Demir, Kutsev Bengisu Ozyoruk, Yasin Durusoy, Ezgi Cinar, Gurdeniz Serin, Kayhan Basak, Emre Cagatay Kose, Malik Ergin, Murat Sezak, G Evren Keles, Sergulen Dervisoglu, Basak Doganavsargil Yakut, Yavuz Nuri Ertas, Feras Alaqad, Mehmet Turan","doi":"10.1016/j.labinv.2024.102189","DOIUrl":null,"url":null,"abstract":"<p><p>Hirschsprung disease (HD), a congenital disease characterized by the absence of ganglion cells, presents significant surgical challenges. Addressing a critical gap in intraoperative diagnostics, we introduce transformative artificial-intelligence (AI) approach that significantly enhances the detection of ganglion cells in frozen-sections (FSs). The dataset comprises 366 frozen and 302 formalin-fixed-paraffin-embedded (FFPE) hematoxylin and eosin-stained slides obtained from 164 patients from three centers. Three pathologists annotated the ganglion cells on the whole-slide-images (WSIs) using bounding boxes. Tissue regions within WSIs were segmented and split into patches of 2000x2000 pixels. A deep-learning pipeline utilizing ResNet-50 model for feature extraction and Grad-CAM algorithm to generate heatmaps for ganglion cell localization was employed. The binary classification performance of the model was evaluated on independent test cohorts. In the multi-reader study, 10-pathologists assessed 50-frozen WSIs, with 25-slides containing ganglion cells, and 25-slides without. In the first phase of the study, pathologists evaluated the slides as in their routine practice. After two-week washout period, pathologists reevaluated the same WSIs along with the four patches with the highest probability of containing ganglion cells. The proposed deep-learning approach achieved an accuracy of 91.3%, 92.8%, 90.1% in detecting ganglion cells within WSIs in the test dataset obtained from centers. In the reader study, on average, the pathologists' diagnostic accuracy increased from 77% to 85.8% with the model's heatmap support while the diagnosis time decreased from an average of 139.7 seconds to 70.5 seconds. Notably, when applied in real-world settings with group of pathologists, our model's integration brought about substantial improvement in diagnosis precision and reduced the time required for diagnoses by half. This notable advance in AI-driven diagnostics not only sets new-standard for surgical decision-making in HD but also creates opportunities for its wider implementation in various clinical settings, highlighting its pivotal role in enhancing the efficacy and accuracy of FS analyses.</p>","PeriodicalId":17930,"journal":{"name":"Laboratory Investigation","volume":" ","pages":"102189"},"PeriodicalIF":5.1000,"publicationDate":"2024-11-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"The Future of Surgical Diagnostics: AI-Enhanced Detection of Ganglion Cells for Hirschsprung Disease.\",\"authors\":\"Derya Demir, Kutsev Bengisu Ozyoruk, Yasin Durusoy, Ezgi Cinar, Gurdeniz Serin, Kayhan Basak, Emre Cagatay Kose, Malik Ergin, Murat Sezak, G Evren Keles, Sergulen Dervisoglu, Basak Doganavsargil Yakut, Yavuz Nuri Ertas, Feras Alaqad, Mehmet Turan\",\"doi\":\"10.1016/j.labinv.2024.102189\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Hirschsprung disease (HD), a congenital disease characterized by the absence of ganglion cells, presents significant surgical challenges. Addressing a critical gap in intraoperative diagnostics, we introduce transformative artificial-intelligence (AI) approach that significantly enhances the detection of ganglion cells in frozen-sections (FSs). The dataset comprises 366 frozen and 302 formalin-fixed-paraffin-embedded (FFPE) hematoxylin and eosin-stained slides obtained from 164 patients from three centers. Three pathologists annotated the ganglion cells on the whole-slide-images (WSIs) using bounding boxes. Tissue regions within WSIs were segmented and split into patches of 2000x2000 pixels. A deep-learning pipeline utilizing ResNet-50 model for feature extraction and Grad-CAM algorithm to generate heatmaps for ganglion cell localization was employed. The binary classification performance of the model was evaluated on independent test cohorts. In the multi-reader study, 10-pathologists assessed 50-frozen WSIs, with 25-slides containing ganglion cells, and 25-slides without. In the first phase of the study, pathologists evaluated the slides as in their routine practice. After two-week washout period, pathologists reevaluated the same WSIs along with the four patches with the highest probability of containing ganglion cells. The proposed deep-learning approach achieved an accuracy of 91.3%, 92.8%, 90.1% in detecting ganglion cells within WSIs in the test dataset obtained from centers. In the reader study, on average, the pathologists' diagnostic accuracy increased from 77% to 85.8% with the model's heatmap support while the diagnosis time decreased from an average of 139.7 seconds to 70.5 seconds. Notably, when applied in real-world settings with group of pathologists, our model's integration brought about substantial improvement in diagnosis precision and reduced the time required for diagnoses by half. This notable advance in AI-driven diagnostics not only sets new-standard for surgical decision-making in HD but also creates opportunities for its wider implementation in various clinical settings, highlighting its pivotal role in enhancing the efficacy and accuracy of FS analyses.</p>\",\"PeriodicalId\":17930,\"journal\":{\"name\":\"Laboratory Investigation\",\"volume\":\" \",\"pages\":\"102189\"},\"PeriodicalIF\":5.1000,\"publicationDate\":\"2024-11-20\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Laboratory Investigation\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://doi.org/10.1016/j.labinv.2024.102189\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"MEDICINE, RESEARCH & EXPERIMENTAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Laboratory Investigation","FirstCategoryId":"3","ListUrlMain":"https://doi.org/10.1016/j.labinv.2024.102189","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"MEDICINE, RESEARCH & EXPERIMENTAL","Score":null,"Total":0}
The Future of Surgical Diagnostics: AI-Enhanced Detection of Ganglion Cells for Hirschsprung Disease.
Hirschsprung disease (HD), a congenital disease characterized by the absence of ganglion cells, presents significant surgical challenges. Addressing a critical gap in intraoperative diagnostics, we introduce transformative artificial-intelligence (AI) approach that significantly enhances the detection of ganglion cells in frozen-sections (FSs). The dataset comprises 366 frozen and 302 formalin-fixed-paraffin-embedded (FFPE) hematoxylin and eosin-stained slides obtained from 164 patients from three centers. Three pathologists annotated the ganglion cells on the whole-slide-images (WSIs) using bounding boxes. Tissue regions within WSIs were segmented and split into patches of 2000x2000 pixels. A deep-learning pipeline utilizing ResNet-50 model for feature extraction and Grad-CAM algorithm to generate heatmaps for ganglion cell localization was employed. The binary classification performance of the model was evaluated on independent test cohorts. In the multi-reader study, 10-pathologists assessed 50-frozen WSIs, with 25-slides containing ganglion cells, and 25-slides without. In the first phase of the study, pathologists evaluated the slides as in their routine practice. After two-week washout period, pathologists reevaluated the same WSIs along with the four patches with the highest probability of containing ganglion cells. The proposed deep-learning approach achieved an accuracy of 91.3%, 92.8%, 90.1% in detecting ganglion cells within WSIs in the test dataset obtained from centers. In the reader study, on average, the pathologists' diagnostic accuracy increased from 77% to 85.8% with the model's heatmap support while the diagnosis time decreased from an average of 139.7 seconds to 70.5 seconds. Notably, when applied in real-world settings with group of pathologists, our model's integration brought about substantial improvement in diagnosis precision and reduced the time required for diagnoses by half. This notable advance in AI-driven diagnostics not only sets new-standard for surgical decision-making in HD but also creates opportunities for its wider implementation in various clinical settings, highlighting its pivotal role in enhancing the efficacy and accuracy of FS analyses.
期刊介绍:
Laboratory Investigation is an international journal owned by the United States and Canadian Academy of Pathology. Laboratory Investigation offers prompt publication of high-quality original research in all biomedical disciplines relating to the understanding of human disease and the application of new methods to the diagnosis of disease. Both human and experimental studies are welcome.