组织病理学中未知偏差的因果去伪存真--结肠癌应用案例。

IF 2.9 3区 综合性期刊 Q1 MULTIDISCIPLINARY SCIENCES PLoS ONE Pub Date : 2024-11-22 eCollection Date: 2024-01-01 DOI:10.1371/journal.pone.0303415
Ramón L Correa-Medero, Rish Pai, Kingsley Ebare, Daniel D Buchanan, Mark A Jenkins, Amanda I Phipps, Polly A Newcomb, Steven Gallinger, Robert Grant, Loic Le Marchand, Imon Banerjee
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引用次数: 0

摘要

人工智能的发展为使用数字组织病理切片进行准确诊断和预后分析提供了新的可能性,这不仅节省了专家的工作时间,还使评估更加标准化和准确。然而,在组织病理学领域,保持人工智能模型在外部网站上的性能是一个极具挑战性的问题,这主要是由于数据采集的差异和/或采样偏差造成的。虽然人工智能模型也能学习到虚假相关性,但它们在不同验证人群中的表现并不相同。虽然在临床应用前检测并消除人工智能模型的偏差至关重要,但偏差的原因往往是未知的。我们提出了一种因果生存模型,它可以利用因果推理框架来减少未知偏差的影响。我们使用该模型预测了结直肠癌患者的无复发生存期,该模型使用了来自七个地理分布地点的定量组织病理学特征,与基线传统 Cox Proportional Hazards 和 DeepSurvival 模型相比,取得了相同的性能。通过消融研究,我们证明了新增加的潜在概率调整和辅助损失的益处。虽然未知偏差原因的检测问题尚未解决,但我们提出了一种因果去杂解决方案,以减少偏差并提高人工智能模型在组织病理学领域跨部位的通用性。模型训练的开源代码库可从 https://github.com/ramon349/fair_survival.git 获取。
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Causal debiasing for unknown bias in histopathology-A colon cancer use case.

Advancement of AI has opened new possibility for accurate diagnosis and prognosis using digital histopathology slides which not only saves hours of expert effort but also makes the estimation more standardized and accurate. However, preserving the AI model performance on the external sites is an extremely challenging problem in the histopathology domain which is primarily due to the difference in data acquisition and/or sampling bias. Although, AI models can also learn spurious correlation, they provide unequal performance across validation population. While it is crucial to detect and remove the bias from the AI model before the clinical application, the cause of the bias is often unknown. We proposed a Causal Survival model that can reduce the effect of unknown bias by leveraging the causal reasoning framework. We use the model to predict recurrence-free survival for the colorectal cancer patients using quantitative histopathology features from seven geographically distributed sites and achieve equalized performance compared to the baseline traditional Cox Proportional Hazards and DeepSurvival model. Through ablation study, we demonstrated benefit of novel addition of latent probability adjustment and auxiliary losses. Although detection of cause of unknown bias is unsolved, we proposed a causal debiasing solution to reduce the bias and improve the AI model generalizibility on the histopathology domain across sites. Open-source codebase for the model training can be accessed from https://github.com/ramon349/fair_survival.git.

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来源期刊
PLoS ONE
PLoS ONE 生物-生物学
CiteScore
6.20
自引率
5.40%
发文量
14242
审稿时长
3.7 months
期刊介绍: PLOS ONE is an international, peer-reviewed, open-access, online publication. PLOS ONE welcomes reports on primary research from any scientific discipline. It provides: * Open-access—freely accessible online, authors retain copyright * Fast publication times * Peer review by expert, practicing researchers * Post-publication tools to indicate quality and impact * Community-based dialogue on articles * Worldwide media coverage
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