利用形态学和 DNA 条形码鉴定研究厦三生岛潮间带动物多样性

IF 0.6 Q4 BIODIVERSITY CONSERVATION Journal of Asia-Pacific Biodiversity Pub Date : 2024-06-29 DOI:10.1016/j.japb.2024.05.003
Jinlin Liu , Xiaoli Cao , Longjiao Yao , Ruyan He , Zhangyi Xia , Shuang Zhao , Peimin He , Wei Liu
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引用次数: 0

摘要

潮间带动物是生态系统的重要组成部分,物种多样性可以反映当地生态环境的状况。然而,传统的形态鉴定容易出现相应的分类错误或研究局限。近年来,随着分子生物学的发展,许多技术和生物信息学分类方法已被应用于有效识别物种。本研究旨在探讨DNA条形码在厦三生岛潮间带动物物种鉴定中的可行性。通过实验或从美国国家生物技术信息中心(NCBI)数据库下载,共获得41条cox1基因序列。然后采用形态学分类、分子鉴定、系统发生树分析和自动条形码差距发现(ABGD)方法对动物样本进行分析。我们发现,虽然软体动物的分子分类不够准确,但采集到的标本可分为 15 种、12 科和 4 门。Tetraclita japonica、Thais luteostoma 和 Mytilus coruscus 是厦三生岛的主要物种。此外,可能还有一个新物种--Platynereis sp.,需要进一步确认。我们建议结合形态学和分子生物学方法对海洋生物多样性进行进一步鉴定。
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A study on the intertidal animal diversity of Xia-Sanheng Island by using morphological and DNA barcoding identification
Intertidal animals are an essential part of the ecosystem, and species diversity can reflect the state of the local ecological environment. However, traditional morphological identification is prone to corresponding classification errors or research limitations. With the development of molecular biology, many techniques and bioinformatics classification methods have been applied to identify species efficiently in recent years. This research aimed to examine the feasibility of DNA barcoding within the identification of intertidal animal species collected from the Xia-Sanheng Island. A total of 41 cox1 gene sequences were obtained by experimentalization or downloaded from the National Center for Biotechnology Information (NCBI) database. Then morphological classification, molecular identification, phylogenetic tree analysis, and Automatic Barcode Gap Discovery (ABGD) method were used to analyze the animal samples. We found that although the molecular classification of molluscs was not accurate enough, the collected specimens could be divided into 15 species, 12 families, and 4 phyla. Tetraclita japonica, Thais luteostoma, and Mytilus coruscus were the dominant species on the Xia-Sanheng Island. Additionally, there may be a new species, Platynereis sp., which needs further confirmation. We suggest that further identification of marine biodiversity should be carried out by combining morphological and molecular biological methods.
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来源期刊
Journal of Asia-Pacific Biodiversity
Journal of Asia-Pacific Biodiversity Agricultural and Biological Sciences-Insect Science
CiteScore
1.70
自引率
12.50%
发文量
94
审稿时长
27 days
期刊介绍: The Journal of Asia-Pacific Biodiversity (previous title was Journal of Korean Nature) is an official journal of National Science Museum of Korea (NSMK) and Korea National Arboretum (KNA). The scope of journal is wide and multidisciplinary that publishes original research papers, review articles, as well as conceptual, technical and methodological papers on all aspects of biological diversity-its description, analysis and conservation, and its application by humankind. This wide and multidisciplinary journal aims to provide both scientists and practitioners in conservation theory, policy and management with comprehensive and applicable information. However, papers should not be submitted that deal with microorganisms, except in invited paper. Articles that are focused on the social and economical aspects of biodiversity will be normally not accepted.
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