Jinlin Liu , Xiaoli Cao , Longjiao Yao , Ruyan He , Zhangyi Xia , Shuang Zhao , Peimin He , Wei Liu
{"title":"利用形态学和 DNA 条形码鉴定研究厦三生岛潮间带动物多样性","authors":"Jinlin Liu , Xiaoli Cao , Longjiao Yao , Ruyan He , Zhangyi Xia , Shuang Zhao , Peimin He , Wei Liu","doi":"10.1016/j.japb.2024.05.003","DOIUrl":null,"url":null,"abstract":"<div><div>Intertidal animals are an essential part of the ecosystem, and species diversity can reflect the state of the local ecological environment. However, traditional morphological identification is prone to corresponding classification errors or research limitations. With the development of molecular biology, many techniques and bioinformatics classification methods have been applied to identify species efficiently in recent years. This research aimed to examine the feasibility of DNA barcoding within the identification of intertidal animal species collected from the Xia-Sanheng Island. A total of 41 <em>cox1</em> gene sequences were obtained by experimentalization or downloaded from the National Center for Biotechnology Information (NCBI) database. Then morphological classification, molecular identification, phylogenetic tree analysis, and Automatic Barcode Gap Discovery (ABGD) method were used to analyze the animal samples. We found that although the molecular classification of molluscs was not accurate enough, the collected specimens could be divided into 15 species, 12 families, and 4 phyla. <em>Tetraclita japonica</em>, <em>Thais luteostoma</em>, and <em>Mytilus coruscus</em> were the dominant species on the Xia-Sanheng Island. Additionally, there may be a new species, <em>Platynereis</em> sp., which needs further confirmation. We suggest that further identification of marine biodiversity should be carried out by combining morphological and molecular biological methods.</div></div>","PeriodicalId":37957,"journal":{"name":"Journal of Asia-Pacific Biodiversity","volume":"17 4","pages":"Pages 780-788"},"PeriodicalIF":0.6000,"publicationDate":"2024-06-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A study on the intertidal animal diversity of Xia-Sanheng Island by using morphological and DNA barcoding identification\",\"authors\":\"Jinlin Liu , Xiaoli Cao , Longjiao Yao , Ruyan He , Zhangyi Xia , Shuang Zhao , Peimin He , Wei Liu\",\"doi\":\"10.1016/j.japb.2024.05.003\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Intertidal animals are an essential part of the ecosystem, and species diversity can reflect the state of the local ecological environment. However, traditional morphological identification is prone to corresponding classification errors or research limitations. With the development of molecular biology, many techniques and bioinformatics classification methods have been applied to identify species efficiently in recent years. This research aimed to examine the feasibility of DNA barcoding within the identification of intertidal animal species collected from the Xia-Sanheng Island. A total of 41 <em>cox1</em> gene sequences were obtained by experimentalization or downloaded from the National Center for Biotechnology Information (NCBI) database. Then morphological classification, molecular identification, phylogenetic tree analysis, and Automatic Barcode Gap Discovery (ABGD) method were used to analyze the animal samples. We found that although the molecular classification of molluscs was not accurate enough, the collected specimens could be divided into 15 species, 12 families, and 4 phyla. <em>Tetraclita japonica</em>, <em>Thais luteostoma</em>, and <em>Mytilus coruscus</em> were the dominant species on the Xia-Sanheng Island. Additionally, there may be a new species, <em>Platynereis</em> sp., which needs further confirmation. We suggest that further identification of marine biodiversity should be carried out by combining morphological and molecular biological methods.</div></div>\",\"PeriodicalId\":37957,\"journal\":{\"name\":\"Journal of Asia-Pacific Biodiversity\",\"volume\":\"17 4\",\"pages\":\"Pages 780-788\"},\"PeriodicalIF\":0.6000,\"publicationDate\":\"2024-06-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Asia-Pacific Biodiversity\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2287884X24000785\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q4\",\"JCRName\":\"BIODIVERSITY CONSERVATION\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Asia-Pacific Biodiversity","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2287884X24000785","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q4","JCRName":"BIODIVERSITY CONSERVATION","Score":null,"Total":0}
A study on the intertidal animal diversity of Xia-Sanheng Island by using morphological and DNA barcoding identification
Intertidal animals are an essential part of the ecosystem, and species diversity can reflect the state of the local ecological environment. However, traditional morphological identification is prone to corresponding classification errors or research limitations. With the development of molecular biology, many techniques and bioinformatics classification methods have been applied to identify species efficiently in recent years. This research aimed to examine the feasibility of DNA barcoding within the identification of intertidal animal species collected from the Xia-Sanheng Island. A total of 41 cox1 gene sequences were obtained by experimentalization or downloaded from the National Center for Biotechnology Information (NCBI) database. Then morphological classification, molecular identification, phylogenetic tree analysis, and Automatic Barcode Gap Discovery (ABGD) method were used to analyze the animal samples. We found that although the molecular classification of molluscs was not accurate enough, the collected specimens could be divided into 15 species, 12 families, and 4 phyla. Tetraclita japonica, Thais luteostoma, and Mytilus coruscus were the dominant species on the Xia-Sanheng Island. Additionally, there may be a new species, Platynereis sp., which needs further confirmation. We suggest that further identification of marine biodiversity should be carried out by combining morphological and molecular biological methods.
期刊介绍:
The Journal of Asia-Pacific Biodiversity (previous title was Journal of Korean Nature) is an official journal of National Science Museum of Korea (NSMK) and Korea National Arboretum (KNA). The scope of journal is wide and multidisciplinary that publishes original research papers, review articles, as well as conceptual, technical and methodological papers on all aspects of biological diversity-its description, analysis and conservation, and its application by humankind. This wide and multidisciplinary journal aims to provide both scientists and practitioners in conservation theory, policy and management with comprehensive and applicable information. However, papers should not be submitted that deal with microorganisms, except in invited paper. Articles that are focused on the social and economical aspects of biodiversity will be normally not accepted.