走向极端:裸子植物质体 rpl32 的丧失和菟丝子对其替代的非传统解决方案。

IF 3.6 1区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Molecular Phylogenetics and Evolution Pub Date : 2024-11-22 DOI:10.1016/j.ympev.2024.108243
Karsten Fischer, Sondre Valentin Jordbræk, Stian Olsen, Mathias Bockwoldt, Rainer Schwacke, Björn Usadel, Kirsten Krause
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引用次数: 0

摘要

植物基因组的进化过程充满了植物内部(内共生基因转移/EGT)和非亲缘植物之间(水平基因转移/HGT)的遗传物质交换。这些交换在植物基因组上留下了痕迹。寄生植物以其特殊的进化生态位为这些过程提供了大量实例,因为寄生植物在进化过程中承受着较小的压力,需要保持自养,从而保护其质体基因组。另一方面,寄生植物与不同宿主的密切物理联系使它们能够从其他植物获取遗传物质。基于对包括菟丝子寄生虫和其他寄生植物物种在内的大量数据集的分析,我们发现了菟丝子中编码重要质体核糖体亚基的 rpl32 基因的独特进化史。我们的分析表明,该基因很可能是通过 HGT 从作为菟丝子亚属 Grammica 祖先宿主的 Oxalidales 目成员中分离出来的。在菟丝子属进化之前,Oxalidales 曾遭受过 rpl32 的祖先 EGT。随后的 HGT 解除了质体 rpl32 的进化限制,导致其从质体基因组中消失。菟丝子亚属物种与 Oxalidales 代表物种之间成熟 L32 蛋白的序列高度相似,以及一个令人惊讶的保守转运肽(其在菟丝子中的功能已得到实验验证),都支持了菟丝子中基于 HGT 的获取。本文从链格植物界质体核糖体亚基 EGT 事件的总体模式角度讨论了这些发现。
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Taken to extremes: Loss of plastid rpl32 in Streptophyta and Cuscuta's unconventional solution for its replacement.

The evolution of plant genomes is riddled with exchanges of genetic material within one plant (endosymbiotic gene transfer/EGT) and between unrelated plants (horizontal gene transfer/HGT). These exchanges have left their marks on plant genomes. Parasitic plants with their special evolutionary niche provide ample examples for these processes because they are under a reduced evolutionary pressure to maintain autotrophy and thus to conserve their plastid genomes. On the other hand, the close physical connections with different hosts enabled them to acquire genetic material from other plants. Based on an analysis of an extensive dataset including the parasite Cuscuta campestris and other parasitic plant species, we identified a unique evolutionary history of rpl32 genes coding for an essential plastid ribosomal subunit in Cuscuta. Our analysis suggests that the gene was most likely sequestered by HGT from a member of the Oxalidales order serving as host to an ancestor of the Cuscuta subgenus Grammica. Oxalidales had suffered an ancestral EGT of rpl32 predating the evolution of the genus Cuscuta. The HGT subsequently relieved the plastid rpl32 from its evolutionary constraint and led to its loss from the plastid genome. The HGT-based acquisition in Cuscuta is supported by a high sequence similarity of the mature L32 protein between species of the subgenus Grammica and representatives of the Oxalidales, and by a surprisingly conserved transit peptide, whose functionality in Cuscuta was experimentally verified. The findings are discussed in view of an overall pattern of EGT events for plastid ribosomal subunits in Streptophyta.

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来源期刊
Molecular Phylogenetics and Evolution
Molecular Phylogenetics and Evolution 生物-进化生物学
CiteScore
7.50
自引率
7.30%
发文量
249
审稿时长
7.5 months
期刊介绍: Molecular Phylogenetics and Evolution is dedicated to bringing Darwin''s dream within grasp - to "have fairly true genealogical trees of each great kingdom of Nature." The journal provides a forum for molecular studies that advance our understanding of phylogeny and evolution, further the development of phylogenetically more accurate taxonomic classifications, and ultimately bring a unified classification for all the ramifying lines of life. Phylogeographic studies will be considered for publication if they offer EXCEPTIONAL theoretical or empirical advances.
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