{"title":"火龙果植物化学物质用于控制三种人类致病细菌:体外和硅学方法。","authors":"Zhuan-Ying Yang, Xue-Wen Zheng, Wen-Hao Jiang, Gui-Zhi Chen, Qing-Zhi Liang, Guang-Zhao Xu, Run-Hua Yi","doi":"10.3390/metabo14110577","DOIUrl":null,"url":null,"abstract":"<p><strong>Objectives: </strong>Antibiotic-resistant bacterial infections are a growing global concern. A natural remedy for bacterial infections could be available in the <i>Selenicereus undatus</i> fruit, but its antibacterial and biochemical properties are not fully known.</p><p><strong>Methods: </strong>In this study, the biochemical composition and antibacterial, antioxidant, and cytotoxic activities of the Jindu No. 1 (JD) and Bird's Nest (YW) dragon fruit varieties and their potential effects against <i>E. coli</i>, <i>Pseudomonas</i> sp., and <i>Staphylococcus</i> sp. were scrutinized.</p><p><strong>Results: </strong>The JD fruit extract showed higher antibacterial activity than the YW variety against <i>E. coli</i>, <i>Pseudomonas</i> sp., and <i>Staphylococcus</i> sp. in vitro. Additionally, the JD variety demonstrated more significant antioxidant activity than the YW variety and showed less cytotoxic activity. The JD variety had a higher glucose content, while the YW variety had a higher fructose content, and the phytoconstituents analysis confirmed 659 metabolites in total from the two varieties. Through in silico analyses, phytoconstituents were evaluated to identify potential drug molecules against the selected bacterial strain. Moreover, the molecular docking study revealed that riboprobe and Z-Gly-Pro might be effective against <i>E. coli</i>, 4-hydroxy retinoic acid, and that succinyl adenosine may target <i>Pseudomonas</i> sp., and xanthosine and 2'-deoxyinosine-5'-monophosphate may be effective against <i>Staphylococcus</i> sp. These results were further validated by 100 ns Molecular Dynamics (MD) simulation, and all of the selected compounds exhibited acceptable ADMET features.</p><p><strong>Conclusions: </strong>Therefore, phytoconstituents from <i>S. undatus</i> fruit varieties could be employed to fight human bacterial diseases, and future studies will support the continuation of other biological activities in medical research.</p>","PeriodicalId":18496,"journal":{"name":"Metabolites","volume":"14 11","pages":""},"PeriodicalIF":3.4000,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11596672/pdf/","citationCount":"0","resultStr":"{\"title\":\"<i>Selenicereus undatus</i> (Dragon Fruit) Phytochemicals for Managing Three Human Pathogenic Bacteria: An In Vitro and In Silico Approach.\",\"authors\":\"Zhuan-Ying Yang, Xue-Wen Zheng, Wen-Hao Jiang, Gui-Zhi Chen, Qing-Zhi Liang, Guang-Zhao Xu, Run-Hua Yi\",\"doi\":\"10.3390/metabo14110577\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Objectives: </strong>Antibiotic-resistant bacterial infections are a growing global concern. A natural remedy for bacterial infections could be available in the <i>Selenicereus undatus</i> fruit, but its antibacterial and biochemical properties are not fully known.</p><p><strong>Methods: </strong>In this study, the biochemical composition and antibacterial, antioxidant, and cytotoxic activities of the Jindu No. 1 (JD) and Bird's Nest (YW) dragon fruit varieties and their potential effects against <i>E. coli</i>, <i>Pseudomonas</i> sp., and <i>Staphylococcus</i> sp. were scrutinized.</p><p><strong>Results: </strong>The JD fruit extract showed higher antibacterial activity than the YW variety against <i>E. coli</i>, <i>Pseudomonas</i> sp., and <i>Staphylococcus</i> sp. in vitro. Additionally, the JD variety demonstrated more significant antioxidant activity than the YW variety and showed less cytotoxic activity. The JD variety had a higher glucose content, while the YW variety had a higher fructose content, and the phytoconstituents analysis confirmed 659 metabolites in total from the two varieties. Through in silico analyses, phytoconstituents were evaluated to identify potential drug molecules against the selected bacterial strain. Moreover, the molecular docking study revealed that riboprobe and Z-Gly-Pro might be effective against <i>E. coli</i>, 4-hydroxy retinoic acid, and that succinyl adenosine may target <i>Pseudomonas</i> sp., and xanthosine and 2'-deoxyinosine-5'-monophosphate may be effective against <i>Staphylococcus</i> sp. These results were further validated by 100 ns Molecular Dynamics (MD) simulation, and all of the selected compounds exhibited acceptable ADMET features.</p><p><strong>Conclusions: </strong>Therefore, phytoconstituents from <i>S. undatus</i> fruit varieties could be employed to fight human bacterial diseases, and future studies will support the continuation of other biological activities in medical research.</p>\",\"PeriodicalId\":18496,\"journal\":{\"name\":\"Metabolites\",\"volume\":\"14 11\",\"pages\":\"\"},\"PeriodicalIF\":3.4000,\"publicationDate\":\"2024-10-25\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11596672/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Metabolites\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.3390/metabo14110577\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Metabolites","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.3390/metabo14110577","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
引用次数: 0
摘要
目的:抗生素耐药性细菌感染是全球日益关注的问题。Selenicereus undatus 果实可能是治疗细菌感染的天然药物,但其抗菌和生化特性尚不完全清楚:本研究仔细研究了金都 1 号(JD)和燕窝(YW)火龙果品种的生化成分、抗菌、抗氧化和细胞毒性活性及其对大肠杆菌、假单胞菌和葡萄球菌的潜在作用:结果:与 YW 品种相比,JD 果实提取物在体外对大肠杆菌、假单胞菌和葡萄球菌具有更高的抗菌活性。此外,与 YW 品种相比,JD 品种的抗氧化活性更强,细胞毒性更低。JD 品种的葡萄糖含量较高,而 YW 品种的果糖含量较高,植物成分分析证实两个品种共有 659 种代谢物。通过硅学分析,对植物成分进行了评估,以确定针对所选细菌菌株的潜在药物分子。此外,分子对接研究发现,核糖酸和 Z-Gly-Pro 可能对大肠杆菌有效,4-羟基维甲酸和琥珀酰腺苷可能针对假单胞菌,黄嘌呤核苷和 2'-deoxyinosine-5'-monophosphate 可能对葡萄球菌有效:因此,从未结葡萄果实品种中提取的植物成分可用于抗击人类细菌性疾病,未来的研究将支持在医学研究中继续开发其他生物活性。
Selenicereus undatus (Dragon Fruit) Phytochemicals for Managing Three Human Pathogenic Bacteria: An In Vitro and In Silico Approach.
Objectives: Antibiotic-resistant bacterial infections are a growing global concern. A natural remedy for bacterial infections could be available in the Selenicereus undatus fruit, but its antibacterial and biochemical properties are not fully known.
Methods: In this study, the biochemical composition and antibacterial, antioxidant, and cytotoxic activities of the Jindu No. 1 (JD) and Bird's Nest (YW) dragon fruit varieties and their potential effects against E. coli, Pseudomonas sp., and Staphylococcus sp. were scrutinized.
Results: The JD fruit extract showed higher antibacterial activity than the YW variety against E. coli, Pseudomonas sp., and Staphylococcus sp. in vitro. Additionally, the JD variety demonstrated more significant antioxidant activity than the YW variety and showed less cytotoxic activity. The JD variety had a higher glucose content, while the YW variety had a higher fructose content, and the phytoconstituents analysis confirmed 659 metabolites in total from the two varieties. Through in silico analyses, phytoconstituents were evaluated to identify potential drug molecules against the selected bacterial strain. Moreover, the molecular docking study revealed that riboprobe and Z-Gly-Pro might be effective against E. coli, 4-hydroxy retinoic acid, and that succinyl adenosine may target Pseudomonas sp., and xanthosine and 2'-deoxyinosine-5'-monophosphate may be effective against Staphylococcus sp. These results were further validated by 100 ns Molecular Dynamics (MD) simulation, and all of the selected compounds exhibited acceptable ADMET features.
Conclusions: Therefore, phytoconstituents from S. undatus fruit varieties could be employed to fight human bacterial diseases, and future studies will support the continuation of other biological activities in medical research.
MetabolitesBiochemistry, Genetics and Molecular Biology-Molecular Biology
CiteScore
5.70
自引率
7.30%
发文量
1070
审稿时长
17.17 days
期刊介绍:
Metabolites (ISSN 2218-1989) is an international, peer-reviewed open access journal of metabolism and metabolomics. Metabolites publishes original research articles and review articles in all molecular aspects of metabolism relevant to the fields of metabolomics, metabolic biochemistry, computational and systems biology, biotechnology and medicine, with a particular focus on the biological roles of metabolites and small molecule biomarkers. Metabolites encourages scientists to publish their experimental and theoretical results in as much detail as possible. Therefore, there is no restriction on article length. Sufficient experimental details must be provided to enable the results to be accurately reproduced. Electronic material representing additional figures, materials and methods explanation, or supporting results and evidence can be submitted with the main manuscript as supplementary material.