bia-binder:面向生物图像分析界的网络原生云计算服务。

ArXiv Pub Date : 2024-11-19
Craig T Russell, Jean-Marie Burel, Awais Athar, Simon Li, Ugis Sarkans, Jason Swedlow, Alvis Brazma, Matthew Hartley, Virginie Uhlmann
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引用次数: 0

摘要

我们介绍 bia-binder(生物图像档案装订器),这是一个开源、云架构和基于网络的编码环境,专为生物图像分析量身定制,所有研究人员均可免费使用。该服务生成易于使用的 Jupyter Notebook 编码环境,托管在 EMBL-EBI 的 Embassy 云上,该云提供大量计算资源。bia-binder 架构是免费、开源的,可公开部署。它的特点是可以快速、直接地访问生物图像档案、图像数据资源和生物研究数据库中的图像。我们相信,这项服务可以在缓解当前学术界在获取科学资源方面存在的不平等现象方面发挥作用。随着 bia-binder 生成与编译编码环境的永久链接,我们预计这项服务将在社区内得到广泛使用,并促进探索性研究。可通过 binder.bioimagearchive.org 进行访问,并可在任何标准网络浏览器上运行。
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bia-binder: A web-native cloud compute service for the bioimage analysis community.

We introduce bia-binder (BioImage Archive Binder), an open-source, cloud-architectured, and web-based coding environment tailored to bioimage analysis that is freely accessible to all researchers. The service generates easy-to-use Jupyter Notebook coding environments hosted on EMBL-EBI's Embassy Cloud, which provides significant computational resources. The bia-binder architecture is free, open-source and publicly available for deployment. It features fast and direct access to images in the BioImage Archive, the Image Data Resource, and the BioStudies databases. We believe that this service can play a role in mitigating the current inequalities in access to scientific resources across academia. As bia-binder produces permanent links to compiled coding environments, we foresee the service to become widely-used within the community and enable exploratory research. bia-binder is built and deployed using helmsman and helm and released under the MIT licence. It can be accessed at binder.bioimagearchive.org and runs on any standard web browser.

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