压力下OIH杂化物C2H8N4S22+·2HSO4−的生长、分子对接、Hirshfeld表面分析及结构、形态和力学性能第一性原理研究

IF 4 2区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Molecular Structure Pub Date : 2024-11-20 DOI:10.1016/j.molstruc.2024.140809
Ayoub Eddhimi , Abdellatif Rafik , Burak Tüzün , Gaurav Jhaa , Khalid Yamni , Hafid Zouihri
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引用次数: 0

摘要

采用室温慢蒸发法制备了双硫比斯-(甲脒)双-(硫酸氢)C2H8N4S22+·2HSO4−杂化化合物的单晶。与先前报道的结构(CCDC 1,876,435)相比,对晶体结构进行了更详细的结构研究。通过粉末x射线衍射(PXRD)、扫描电镜(SEM)、紫外-可见吸收分析和Hirshfeld表面分析(SHG)等技术对化合物进行了表征。此外,本研究还利用基于密度泛函理论(DFT)的超软赝势方法,结合Perdew-Burke-Ernzerhof (PBE) GGA近似交换相关性,对不同压力下有机-无机杂化(OIH)的性质进行了全面分析。本文探讨了标题化合物的结构、弹性、形态、力学和电子学等广泛的特性,并模拟了它们在5至20 GPa的静水压力下的演变。结果,观察到结构和电子参数值以及力学性能的显著变化。此外,本文还讨论了所研究杂化晶体材料的NCI、ELF、Hirshfeld表面和分子对接分析。通过分子对接模拟,评估了所检测分子对SARS-CoV-2 S Omicron Spike B.1.1.529 (PDB ID: 7QO9和7QTK)蛋白可能的抗菌作用。
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Growth, molecular docking, Hirshfeld surface analysis and first-principles investigation on the structural, morphological and mechanical properties of the OIH hybrid: C2H8N4S22+·2HSO4− under pressure
Single crystals of the dithiobis-(formamidinium) bis-(hydrogen sulfate) C2H8N4S22+·2HSO4hybrid compound was growth by slow evaporation method at room temperature. The crystal structure was rediscussed with more detailed structural investigations than the previously reported structure (CCDC 1,876,435). The compound was characterized through several techniques, including Powder X-ray Diffraction (PXRD), Scanning Electron Microscopy (SEM), UV–Visible absorption analysis, and Hirshfeld surface analysis (SHG). Also, this study provides a comprehensive analysis of the Organic-Inorganic Hybrid (OIH) properties under different pressures using the ultrasoft pseudopotential method as implemented on the density functional theory (DFT), with the Perdew-Burke-Ernzerhof (PBE) GGA approximation for exchange-correlation. The paper explores a wide range of characteristics, such as structure, elasticity, morphology, mechanics, and electronics of the title compound and simulates their evolution under hydrostatic pressures ranging from 5 to 20 GPa. As results, significant variations in structure and electronic parameter's values and mechanical properties have been observed. Furthermore, NCI, ELF, Hirshfeld Surface and Molecular docking analysis of the studied hybrid crystalline material have been discussed. Molecular docking simulations were used to assess the examined molecule's possible antibacterial action against the protein SARS-CoV-2 S Omicron Spike B.1.1.529 (PDB ID: 7QO9 and 7QTK).
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来源期刊
Journal of Molecular Structure
Journal of Molecular Structure 化学-物理化学
CiteScore
7.10
自引率
15.80%
发文量
2384
审稿时长
45 days
期刊介绍: The Journal of Molecular Structure is dedicated to the publication of full-length articles and review papers, providing important new structural information on all types of chemical species including: • Stable and unstable molecules in all types of environments (vapour, molecular beam, liquid, solution, liquid crystal, solid state, matrix-isolated, surface-absorbed etc.) • Chemical intermediates • Molecules in excited states • Biological molecules • Polymers. The methods used may include any combination of spectroscopic and non-spectroscopic techniques, for example: • Infrared spectroscopy (mid, far, near) • Raman spectroscopy and non-linear Raman methods (CARS, etc.) • Electronic absorption spectroscopy • Optical rotatory dispersion and circular dichroism • Fluorescence and phosphorescence techniques • Electron spectroscopies (PES, XPS), EXAFS, etc. • Microwave spectroscopy • Electron diffraction • NMR and ESR spectroscopies • Mössbauer spectroscopy • X-ray crystallography • Charge Density Analyses • Computational Studies (supplementing experimental methods) We encourage publications combining theoretical and experimental approaches. The structural insights gained by the studies should be correlated with the properties, activity and/ or reactivity of the molecule under investigation and the relevance of this molecule and its implications should be discussed.
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