医学报告生成的主题可分离句子检索

Junting Zhao;Yang Zhou;Zhihao Chen;Huazhu Fu;Liang Wan
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摘要

自动化放射报告在减轻放射科医生繁重的工作量和减轻诊断偏差方面具有巨大的临床潜力。最近,基于检索的报告生成方法获得了越来越多的关注。这些方法预定义了一组候选查询,并通过在现成的句子库中搜索与这些候选查询最匹配的句子来编写报告。然而,由于训练数据的长尾分布,这些模型倾向于学习频繁出现的句子和话题,而忽略了罕见的话题。令人遗憾的是,在许多情况下,对罕见专题的描述往往表明了报告中应该提到的关键发现。为了解决这个问题,我们引入了一个用于医学报告生成的主题可分离句子检索(Teaser)。为了保证常见和罕见主题的综合学习,我们将查询分为常见和罕见类型来学习差异化的主题,然后提出主题对比损失(Topic contrast Loss)来有效地对齐潜在空间中的主题和查询。此外,我们在视觉特征提取之后集成了一个Abstractor模块,这有助于主题解码器更深入地理解视觉观察意图。在MIMIC-CXR和IU x射线数据集上的实验表明,Teaser超越了最先进的模型,同时也验证了它有效表示罕见主题的能力,并在查询和主题之间建立更可靠的对应关系。代码可在https://github.com/CindyZJT/Teaser.git上获得。
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Topicwise Separable Sentence Retrieval for Medical Report Generation
Automated radiology reporting holds immense clinical potential in alleviating the burdensome workload of radiologists and mitigating diagnostic bias. Recently, retrieval-based report generation methods have garnered increasing attention. These methods predefine a set of candidate queries and compose reports by searching for sentences in an off-the-shelf sentence gallery that best match these candidate queries. However, due to the long-tail distribution of the training data, these models tend to learn frequently occurring sentences and topics, overlooking the rare topics. Regrettably, in many cases, the descriptions of rare topics often indicate critical findings that should be mentioned in the report. To address this problem, we introduce a Topicwise Separable Sentence Retrieval (Teaser) for medical report generation. To ensure comprehensive learning of both common and rare topics, we categorize queries into common and rare types to learn differentiated topics, and then propose Topic Contrastive Loss to effectively align topics and queries in the latent space. Moreover, we integrate an Abstractor module following the extraction of visual features, which aids the topic decoder in gaining a deeper understanding of the visual observational intent. Experiments on the MIMIC-CXR and IU X-ray datasets demonstrate that Teaser surpasses state-of-the-art models, while also validating its capability to effectively represent rare topics and establish more dependable correspondences between queries and topics. The code is available at https://github.com/CindyZJT/Teaser.git.
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