Ali Jafari , Ali Asghar Alesheikh , Iman Zandi , Aynaz Lotfata
{"title":"利用可解释的优化自适应神经模糊推理系统对人类布鲁氏菌病易感性的空间预测。","authors":"Ali Jafari , Ali Asghar Alesheikh , Iman Zandi , Aynaz Lotfata","doi":"10.1016/j.actatropica.2024.107483","DOIUrl":null,"url":null,"abstract":"<div><div>Brucellosis, a zoonotic disease caused by <em>Brucella</em> bacteria, poses significant risks to human, livestock, and wildlife health, alongside economic losses from livestock morbidity and mortality. This study improves Human Brucellosis Susceptibility Mapping (HBSM) by integrating the Adaptive Neuro-Fuzzy Inference System (ANFIS) with meta-heuristic algorithms, including Genetic Algorithm (GA) and Particle Swarm Optimization (PSO). Boruta-XGBoost identified key covariates, while VIF and tolerance tests addressed collinearity, and Shapley additive explanation (SHAP) values enhanced model interpretability. In Mazandaran province, Iran (2012–2018), the hybrid ANFIS-PSO model demonstrated superior performance (RMSE: 0.5076; R<sup>2</sup>: 0.6980). SHAP analysis highlighted mean elevation, NDVI, and relative humidity as the most impactful covariates, while max evaporation and precipitation had minimal influence. ANFIS-based models outperformed Support Vector Regression (SVR), offering a robust framework for brucellosis control. This approach enables effective interventions and resource allocation, with potential for improvement through advanced algorithms and greater interpretability.</div></div>","PeriodicalId":7240,"journal":{"name":"Acta tropica","volume":"260 ","pages":"Article 107483"},"PeriodicalIF":2.1000,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Spatial prediction of human brucellosis susceptibility using an explainable optimized adaptive neuro fuzzy inference system\",\"authors\":\"Ali Jafari , Ali Asghar Alesheikh , Iman Zandi , Aynaz Lotfata\",\"doi\":\"10.1016/j.actatropica.2024.107483\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Brucellosis, a zoonotic disease caused by <em>Brucella</em> bacteria, poses significant risks to human, livestock, and wildlife health, alongside economic losses from livestock morbidity and mortality. This study improves Human Brucellosis Susceptibility Mapping (HBSM) by integrating the Adaptive Neuro-Fuzzy Inference System (ANFIS) with meta-heuristic algorithms, including Genetic Algorithm (GA) and Particle Swarm Optimization (PSO). Boruta-XGBoost identified key covariates, while VIF and tolerance tests addressed collinearity, and Shapley additive explanation (SHAP) values enhanced model interpretability. In Mazandaran province, Iran (2012–2018), the hybrid ANFIS-PSO model demonstrated superior performance (RMSE: 0.5076; R<sup>2</sup>: 0.6980). SHAP analysis highlighted mean elevation, NDVI, and relative humidity as the most impactful covariates, while max evaporation and precipitation had minimal influence. ANFIS-based models outperformed Support Vector Regression (SVR), offering a robust framework for brucellosis control. This approach enables effective interventions and resource allocation, with potential for improvement through advanced algorithms and greater interpretability.</div></div>\",\"PeriodicalId\":7240,\"journal\":{\"name\":\"Acta tropica\",\"volume\":\"260 \",\"pages\":\"Article 107483\"},\"PeriodicalIF\":2.1000,\"publicationDate\":\"2024-12-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Acta tropica\",\"FirstCategoryId\":\"3\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0001706X24003644\",\"RegionNum\":3,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"PARASITOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Acta tropica","FirstCategoryId":"3","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0001706X24003644","RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"PARASITOLOGY","Score":null,"Total":0}
Spatial prediction of human brucellosis susceptibility using an explainable optimized adaptive neuro fuzzy inference system
Brucellosis, a zoonotic disease caused by Brucella bacteria, poses significant risks to human, livestock, and wildlife health, alongside economic losses from livestock morbidity and mortality. This study improves Human Brucellosis Susceptibility Mapping (HBSM) by integrating the Adaptive Neuro-Fuzzy Inference System (ANFIS) with meta-heuristic algorithms, including Genetic Algorithm (GA) and Particle Swarm Optimization (PSO). Boruta-XGBoost identified key covariates, while VIF and tolerance tests addressed collinearity, and Shapley additive explanation (SHAP) values enhanced model interpretability. In Mazandaran province, Iran (2012–2018), the hybrid ANFIS-PSO model demonstrated superior performance (RMSE: 0.5076; R2: 0.6980). SHAP analysis highlighted mean elevation, NDVI, and relative humidity as the most impactful covariates, while max evaporation and precipitation had minimal influence. ANFIS-based models outperformed Support Vector Regression (SVR), offering a robust framework for brucellosis control. This approach enables effective interventions and resource allocation, with potential for improvement through advanced algorithms and greater interpretability.
期刊介绍:
Acta Tropica, is an international journal on infectious diseases that covers public health sciences and biomedical research with particular emphasis on topics relevant to human and animal health in the tropics and the subtropics.