与RNA序列变化相关的RNA年龄的定义。

IF 6.4 2区 生物学 Q1 CELL BIOLOGY Wiley Interdisciplinary Reviews: RNA Pub Date : 2024-11-01 DOI:10.1002/wrna.1876
Zhongneng Xu, Shuichi Asakawa
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引用次数: 0

摘要

随着时间的推移,核糖核酸(RNA)的结构和功能在不同的细胞内和细胞外条件下发生动态变化。然而,缺乏对RNA时代概念的研究来描述其多样化的命运。本研究提出了RNA年龄的定义来解决这个问题。RNA年龄被定义为一个数字序列,其中序列中的元素是RNA中核糖核苷酸残基的核苷酸年龄。平均核苷酸年龄表示RNA年龄。这个定义描述了经历了不同生活史的rna的时间性质,反映了每个核糖核苷酸残基的动态状态,可以用数学的方式表达。值得注意的是,当使用平均核苷酸年龄来表示RNA年龄时,事件(包括碱基插入、碱基缺失和碱基替换)可能会导致RNA变得更年轻或更老。虽然信息,包括RNA中添加标记物的存在、RNA的化学修饰结构以及细胞中mRNA内含子的切除,可能为鉴定RNA年龄提供了基础,但对于确定野生细胞外RNA的RNA年龄知之甚少。尽管如此,我们认为RNA年龄与RNA在细胞内和细胞外条件下的多种生物学特性有着重要的关系。因此,我们提出的RNA年龄定义为研究RNA功能、RNA老化、古代RNA、环境RNA和其他生物分子年龄的动态变化提供了新的视角。
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The Definition of RNA Age Related to RNA Sequence Changes.

Ribonucleic acid (RNA) undergoes dynamic changes in its structure and function under various intracellular and extracellular conditions over time. However, there is a lack of research on the concept of the RNA age to describe its diverse fates. This study proposes a definition of RNA age to address this issue. RNA age was defined as a sequence of numbers wherein the elements in the sequence were the nucleotide ages of the ribonucleotide residues in the RNA. Mean nucleotide age was used to represent RNA age. This definition describes the temporal properties of RNAs that have undergone diverse life histories and reflects the dynamic state of each ribonucleotide residue, which can be expressed mathematically. Notably, events (including base insertions, base deletions, and base substitutions) are likely to cause RNA to become younger or older when using mean nucleotide ages to represent the RNA age. Although information, including the presence of added markers in RNA, chemical modification structure of the RNA, and the excision of introns in the mRNA in cells, may provide a basis for identifying RNA age, little is known about determining the RNA age of extracellular RNA in the wild. Nonetheless, we believe that RNA age has an important relationship with the diverse biological properties of RNA under intracellular and extracellular conditions. Therefore, our proposed definition of RNA age offers new perspectives for studying dynamic changes in RNA function, RNA aging, ancient RNA, environmental RNA, and the ages of other biomolecules.

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来源期刊
CiteScore
14.80
自引率
4.10%
发文量
67
审稿时长
6-12 weeks
期刊介绍: WIREs RNA aims to provide comprehensive, up-to-date, and coherent coverage of this interesting and growing field, providing a framework for both RNA experts and interdisciplinary researchers to not only gain perspective in areas of RNA biology, but to generate new insights and applications as well. Major topics to be covered are: RNA Structure and Dynamics; RNA Evolution and Genomics; RNA-Based Catalysis; RNA Interactions with Proteins and Other Molecules; Translation; RNA Processing; RNA Export/Localization; RNA Turnover and Surveillance; Regulatory RNAs/RNAi/Riboswitches; RNA in Disease and Development; and RNA Methods.
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