多功能振动探针3-(4-叠氮苯基)丙腈的线性和二维红外光谱。用同位素取代法消除费米三元组的扰动。

IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL Chemphyschem Pub Date : 2024-12-05 DOI:10.1002/cphc.202400818
Claudia Gräve, Jörg Lindner, Stefan Flesch, Luis I Domenianni, Peter Vöhringer
{"title":"多功能振动探针3-(4-叠氮苯基)丙腈的线性和二维红外光谱。用同位素取代法消除费米三元组的扰动。","authors":"Claudia Gräve, Jörg Lindner, Stefan Flesch, Luis I Domenianni, Peter Vöhringer","doi":"10.1002/cphc.202400818","DOIUrl":null,"url":null,"abstract":"<p><p>Infrared probes are chemical moieties whose vibrational modes are used to obtain spectroscopic information about structural dynamics of complex systems; in particular, of biomacromolecules. Here, we explore the vibrational spectroscopy and dynamics of a reagent, 3-(4-azidophenyl)propiolonitrile (AzPPN), for selectively tagging thiols in protein environments with a multifunctional infrared probe containing both, an azide and a nitrile chromophore. The linear infrared spectrum of AzPPN is heavily perturbed in the antisymmetric azide stretching region as a result of accidental Fermi resonances. Isotopically labeling the azide group at the β-position deperturbs the spectrum considerably and reveals two combination tones that mix with the antisymmetric stretching fundamental into a Fermi triad of hybrid vibrational excitations. Moreover, two-dimensional infrared (2DIR) spectra were recorded for <sup>15</sup>N<sub>β</sub>-labeled AzPPN, which reveal waiting-time-dependent spectral shifts of diagonal peaks and dynamic buildups of cross peaks. The 2DIR-spectral evolution is indicative of intramolecular distribution of the pump-induced excess vibrational energy into low-frequency modes of the molecule that are coupled to either the azide or the nitrile stretching transition dipoles. Finally, IR-pump/IR-probe spectra with selective narrowband excitation reveal a time constant of 2.3 ps for intramolecular vibrational redistribution (IVR) and 18 ps for the final energy dissipation into the solvent. The cross-peak dynamics corroborate a notion in which IVR within the AzPPN-molecule is an irreversible process.</p>","PeriodicalId":9819,"journal":{"name":"Chemphyschem","volume":" ","pages":"e202400818"},"PeriodicalIF":2.3000,"publicationDate":"2024-12-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Linear and Two-Dimensional Infrared Spectroscopy of the Multifunctional Vibrational Probe, 3-(4-Azidophenyl) Propiolonitrile. Deperturbing a Fermi Triad by Isotopic Substitution.\",\"authors\":\"Claudia Gräve, Jörg Lindner, Stefan Flesch, Luis I Domenianni, Peter Vöhringer\",\"doi\":\"10.1002/cphc.202400818\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Infrared probes are chemical moieties whose vibrational modes are used to obtain spectroscopic information about structural dynamics of complex systems; in particular, of biomacromolecules. Here, we explore the vibrational spectroscopy and dynamics of a reagent, 3-(4-azidophenyl)propiolonitrile (AzPPN), for selectively tagging thiols in protein environments with a multifunctional infrared probe containing both, an azide and a nitrile chromophore. The linear infrared spectrum of AzPPN is heavily perturbed in the antisymmetric azide stretching region as a result of accidental Fermi resonances. Isotopically labeling the azide group at the β-position deperturbs the spectrum considerably and reveals two combination tones that mix with the antisymmetric stretching fundamental into a Fermi triad of hybrid vibrational excitations. Moreover, two-dimensional infrared (2DIR) spectra were recorded for <sup>15</sup>N<sub>β</sub>-labeled AzPPN, which reveal waiting-time-dependent spectral shifts of diagonal peaks and dynamic buildups of cross peaks. The 2DIR-spectral evolution is indicative of intramolecular distribution of the pump-induced excess vibrational energy into low-frequency modes of the molecule that are coupled to either the azide or the nitrile stretching transition dipoles. Finally, IR-pump/IR-probe spectra with selective narrowband excitation reveal a time constant of 2.3 ps for intramolecular vibrational redistribution (IVR) and 18 ps for the final energy dissipation into the solvent. The cross-peak dynamics corroborate a notion in which IVR within the AzPPN-molecule is an irreversible process.</p>\",\"PeriodicalId\":9819,\"journal\":{\"name\":\"Chemphyschem\",\"volume\":\" \",\"pages\":\"e202400818\"},\"PeriodicalIF\":2.3000,\"publicationDate\":\"2024-12-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Chemphyschem\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1002/cphc.202400818\",\"RegionNum\":3,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Chemphyschem","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1002/cphc.202400818","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
引用次数: 0

摘要

红外探针是一种化学元件,其振动模式用于获取复杂体系结构动力学的光谱信息;特别是生物大分子。在这里,我们探索了一种试剂,3-(4-叠氮苯基)丙腈(AzPPN)的振动光谱和动力学,用于选择性标记蛋白质环境中的硫醇用多功能红外探针,同时包含叠氮和腈发色团。由于偶然的费米共振,AzPPN的线性红外光谱在反对称叠氮化物拉伸区受到严重干扰。同位素标记叠氮化物基团在β-位置显著地干扰了光谱,并揭示了两种组合音调,它们与反对称拉伸基元混合成混合振动激发的费米三重奏。此外,还记录了15n β标记AzPPN的二维红外(2DIR)光谱,揭示了对角峰随等待时间的光谱位移和交叉峰的动态积累。2dir -光谱时间演化表明,在泵浦诱导的过量振动能量的2-3 ps内,不可逆的分子内重新分配到分子的低频模式,这些模式与叠氮化物或腈拉伸跃迁偶极子耦合。最后,能量耗散到溶剂中发生的时间常数为18ps。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Linear and Two-Dimensional Infrared Spectroscopy of the Multifunctional Vibrational Probe, 3-(4-Azidophenyl) Propiolonitrile. Deperturbing a Fermi Triad by Isotopic Substitution.

Infrared probes are chemical moieties whose vibrational modes are used to obtain spectroscopic information about structural dynamics of complex systems; in particular, of biomacromolecules. Here, we explore the vibrational spectroscopy and dynamics of a reagent, 3-(4-azidophenyl)propiolonitrile (AzPPN), for selectively tagging thiols in protein environments with a multifunctional infrared probe containing both, an azide and a nitrile chromophore. The linear infrared spectrum of AzPPN is heavily perturbed in the antisymmetric azide stretching region as a result of accidental Fermi resonances. Isotopically labeling the azide group at the β-position deperturbs the spectrum considerably and reveals two combination tones that mix with the antisymmetric stretching fundamental into a Fermi triad of hybrid vibrational excitations. Moreover, two-dimensional infrared (2DIR) spectra were recorded for 15Nβ-labeled AzPPN, which reveal waiting-time-dependent spectral shifts of diagonal peaks and dynamic buildups of cross peaks. The 2DIR-spectral evolution is indicative of intramolecular distribution of the pump-induced excess vibrational energy into low-frequency modes of the molecule that are coupled to either the azide or the nitrile stretching transition dipoles. Finally, IR-pump/IR-probe spectra with selective narrowband excitation reveal a time constant of 2.3 ps for intramolecular vibrational redistribution (IVR) and 18 ps for the final energy dissipation into the solvent. The cross-peak dynamics corroborate a notion in which IVR within the AzPPN-molecule is an irreversible process.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Chemphyschem
Chemphyschem 化学-物理:原子、分子和化学物理
CiteScore
4.60
自引率
3.40%
发文量
425
审稿时长
1.1 months
期刊介绍: ChemPhysChem is one of the leading chemistry/physics interdisciplinary journals (ISI Impact Factor 2018: 3.077) for physical chemistry and chemical physics. It is published on behalf of Chemistry Europe, an association of 16 European chemical societies. ChemPhysChem is an international source for important primary and critical secondary information across the whole field of physical chemistry and chemical physics. It integrates this wide and flourishing field ranging from Solid State and Soft-Matter Research, Electro- and Photochemistry, Femtochemistry and Nanotechnology, Complex Systems, Single-Molecule Research, Clusters and Colloids, Catalysis and Surface Science, Biophysics and Physical Biochemistry, Atmospheric and Environmental Chemistry, and many more topics. ChemPhysChem is peer-reviewed.
期刊最新文献
127I Solid-State NMR Spectroscopy of Organic Periodates Featuring Halogen Bonded IO4̶ … IO4̶ Adducts. Progress and Perspectives of Lithium Isotope Separation. Geometrical and Electronic Structure of Fluorinated and Non-fluorinated Platinum(II) Tetraphenylporphyrin Complexes. A hidden chemical assembly mechanism: reconstruction-by-reconstruction cycle growth in HKUST-1 MOF layer synthesis. Advances in CO2 assisted oxidative dehydrogenation of light alkanes to light alkenes.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1