通过主动学习和动态模拟,筛选、优化和ADMET评估HCJ007治疗胰腺癌。

IF 3.8 3区 化学 Q2 CHEMISTRY, MULTIDISCIPLINARY Frontiers in Chemistry Pub Date : 2024-11-25 eCollection Date: 2024-01-01 DOI:10.3389/fchem.2024.1482758
YunYun Xu, Qiang Wang, GaoQiang Xu, YouJian Xu, YiPing Mou
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引用次数: 0

摘要

在这项研究中,我们利用一个复杂的主动学习模型来增强SQLE抑制剂的虚拟筛选。该模型提高了预测精度,识别出在结合亲和力和热力学稳定性方面具有显著优势的化合物。对化合物CMNPD11566及其衍生物HCJ007进行了详细分析,包括分子动力学模拟和ADMET分析。CMNPD11566与SQLE的相互作用稳定,而HCJ007的结合稳定性更好,与关键残基的相互作用更频繁,表明其动态适应性和整体结合有效性增强。ADMET数据比较突出了hcj007在低毒性和更好的药物相似性方面的优势。我们的研究结果表明,HCJ007是抑制SQLE的有希望的候选药物,在各种药代动力学和安全性参数上都比CMNPD11566有显著改善。该研究强调了计算模型在药物发现中的功效以及全面的临床前评估的重要性。
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Screening, optimization, and ADMET evaluation of HCJ007 for pancreatic cancer treatment through active learning and dynamics simulation.

In this study, we leveraged a sophisticated active learning model to enhance virtual screening for SQLE inhibitors. The model's improved predictive accuracy identified compounds with significant advantages in binding affinity and thermodynamic stability. Detailed analyses, including molecular dynamics simulations and ADMET profiling, were conducted, particularly focusing on compounds CMNPD11566 and its derivative HCJ007. CMNPD11566 showed stable interactions with SQLE, while HCJ007 exhibited improved binding stability and more frequent interactions with key residues, indicating enhanced dynamic adaptability and overall binding effectiveness. ADMET data comparison highlighted HCJ007s superior profile in terms of lower toxicity and better drug-likeness. Our findings suggest HCJ007 as a promising candidate for SQLE inhibition, with significant improvements over CMNPD11566 in various pharmacokinetic and safety parameters. The study underscores the efficacy of computational models in drug discovery and the importance of comprehensive preclinical evaluations.

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来源期刊
Frontiers in Chemistry
Frontiers in Chemistry Chemistry-General Chemistry
CiteScore
8.50
自引率
3.60%
发文量
1540
审稿时长
12 weeks
期刊介绍: Frontiers in Chemistry is a high visiblity and quality journal, publishing rigorously peer-reviewed research across the chemical sciences. Field Chief Editor Steve Suib at the University of Connecticut is supported by an outstanding Editorial Board of international researchers. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to academics, industry leaders and the public worldwide. Chemistry is a branch of science that is linked to all other main fields of research. The omnipresence of Chemistry is apparent in our everyday lives from the electronic devices that we all use to communicate, to foods we eat, to our health and well-being, to the different forms of energy that we use. While there are many subtopics and specialties of Chemistry, the fundamental link in all these areas is how atoms, ions, and molecules come together and come apart in what some have come to call the “dance of life”. All specialty sections of Frontiers in Chemistry are open-access with the goal of publishing outstanding research publications, review articles, commentaries, and ideas about various aspects of Chemistry. The past forms of publication often have specific subdisciplines, most commonly of analytical, inorganic, organic and physical chemistries, but these days those lines and boxes are quite blurry and the silos of those disciplines appear to be eroding. Chemistry is important to both fundamental and applied areas of research and manufacturing, and indeed the outlines of academic versus industrial research are also often artificial. Collaborative research across all specialty areas of Chemistry is highly encouraged and supported as we move forward. These are exciting times and the field of Chemistry is an important and significant contributor to our collective knowledge.
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