Mia Mo, Destiny Sabb, Larissa LoBello, Kayla Chambers, Kacie Kershaw, Cameron Welles, Joshua Kurucz, Caleb Rhyne, Angel Nichols, John Stanga, James E J Bedard, Cindy Arrigo
{"title":"kikkawai果蝇D. melanogaster Muller D元素的同源性。","authors":"Mia Mo, Destiny Sabb, Larissa LoBello, Kayla Chambers, Kacie Kershaw, Cameron Welles, Joshua Kurucz, Caleb Rhyne, Angel Nichols, John Stanga, James E J Bedard, Cindy Arrigo","doi":"10.17912/micropub.biology.001322","DOIUrl":null,"url":null,"abstract":"<p><p>The <i>Drosophila kikkawai</i> feature with Gene ID 108083276 was determined to be an ortholog of <i>Drosophila melanogaster</i> absent, small, or homeotic discs 1 ( <i>ash1</i> ). Two isoforms, ash1-PB and ash1-PC, were constructed on the <i>D. kikkawai</i> Muller D element using the GEP annotation protocol. The second coding exon of <i>D. kikkawai</i> <i>ash1</i> includes an insertion translated into 18 additional amino acids compared to the <i>D. melanogaster</i> protein and is supported by RNA-Seq coverage, the lack of splice junction predictions, and multiple gene predictors. The first intron in both isoforms of <i>D. kikkawaiash1</i> contains a well conserved non-canonical GC splice site.</p>","PeriodicalId":74192,"journal":{"name":"microPublication biology","volume":"2024 ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11624501/pdf/","citationCount":"0","resultStr":"{\"title\":\"<i>Drosophila kikkawai</i> ortholog of the <i>D. melanogaster</i> Muller D element <i>ash1</i>.\",\"authors\":\"Mia Mo, Destiny Sabb, Larissa LoBello, Kayla Chambers, Kacie Kershaw, Cameron Welles, Joshua Kurucz, Caleb Rhyne, Angel Nichols, John Stanga, James E J Bedard, Cindy Arrigo\",\"doi\":\"10.17912/micropub.biology.001322\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The <i>Drosophila kikkawai</i> feature with Gene ID 108083276 was determined to be an ortholog of <i>Drosophila melanogaster</i> absent, small, or homeotic discs 1 ( <i>ash1</i> ). Two isoforms, ash1-PB and ash1-PC, were constructed on the <i>D. kikkawai</i> Muller D element using the GEP annotation protocol. The second coding exon of <i>D. kikkawai</i> <i>ash1</i> includes an insertion translated into 18 additional amino acids compared to the <i>D. melanogaster</i> protein and is supported by RNA-Seq coverage, the lack of splice junction predictions, and multiple gene predictors. The first intron in both isoforms of <i>D. kikkawaiash1</i> contains a well conserved non-canonical GC splice site.</p>\",\"PeriodicalId\":74192,\"journal\":{\"name\":\"microPublication biology\",\"volume\":\"2024 \",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-11-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11624501/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"microPublication biology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.17912/micropub.biology.001322\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"microPublication biology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.17912/micropub.biology.001322","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
Drosophila kikkawai ortholog of the D. melanogaster Muller D element ash1.
The Drosophila kikkawai feature with Gene ID 108083276 was determined to be an ortholog of Drosophila melanogaster absent, small, or homeotic discs 1 ( ash1 ). Two isoforms, ash1-PB and ash1-PC, were constructed on the D. kikkawai Muller D element using the GEP annotation protocol. The second coding exon of D. kikkawaiash1 includes an insertion translated into 18 additional amino acids compared to the D. melanogaster protein and is supported by RNA-Seq coverage, the lack of splice junction predictions, and multiple gene predictors. The first intron in both isoforms of D. kikkawaiash1 contains a well conserved non-canonical GC splice site.