kikkawai果蝇D. melanogaster Muller D元素的同源性。

microPublication biology Pub Date : 2024-11-22 eCollection Date: 2024-01-01 DOI:10.17912/micropub.biology.001322
Mia Mo, Destiny Sabb, Larissa LoBello, Kayla Chambers, Kacie Kershaw, Cameron Welles, Joshua Kurucz, Caleb Rhyne, Angel Nichols, John Stanga, James E J Bedard, Cindy Arrigo
{"title":"kikkawai果蝇D. melanogaster Muller D元素的同源性。","authors":"Mia Mo, Destiny Sabb, Larissa LoBello, Kayla Chambers, Kacie Kershaw, Cameron Welles, Joshua Kurucz, Caleb Rhyne, Angel Nichols, John Stanga, James E J Bedard, Cindy Arrigo","doi":"10.17912/micropub.biology.001322","DOIUrl":null,"url":null,"abstract":"<p><p>The <i>Drosophila kikkawai</i> feature with Gene ID 108083276 was determined to be an ortholog of <i>Drosophila melanogaster</i> absent, small, or homeotic discs 1 ( <i>ash1</i> ). Two isoforms, ash1-PB and ash1-PC, were constructed on the <i>D. kikkawai</i> Muller D element using the GEP annotation protocol. The second coding exon of <i>D. kikkawai</i> <i>ash1</i> includes an insertion translated into 18 additional amino acids compared to the <i>D. melanogaster</i> protein and is supported by RNA-Seq coverage, the lack of splice junction predictions, and multiple gene predictors. The first intron in both isoforms of <i>D. kikkawaiash1</i> contains a well conserved non-canonical GC splice site.</p>","PeriodicalId":74192,"journal":{"name":"microPublication biology","volume":"2024 ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11624501/pdf/","citationCount":"0","resultStr":"{\"title\":\"<i>Drosophila kikkawai</i> ortholog of the <i>D. melanogaster</i> Muller D element <i>ash1</i>.\",\"authors\":\"Mia Mo, Destiny Sabb, Larissa LoBello, Kayla Chambers, Kacie Kershaw, Cameron Welles, Joshua Kurucz, Caleb Rhyne, Angel Nichols, John Stanga, James E J Bedard, Cindy Arrigo\",\"doi\":\"10.17912/micropub.biology.001322\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The <i>Drosophila kikkawai</i> feature with Gene ID 108083276 was determined to be an ortholog of <i>Drosophila melanogaster</i> absent, small, or homeotic discs 1 ( <i>ash1</i> ). Two isoforms, ash1-PB and ash1-PC, were constructed on the <i>D. kikkawai</i> Muller D element using the GEP annotation protocol. The second coding exon of <i>D. kikkawai</i> <i>ash1</i> includes an insertion translated into 18 additional amino acids compared to the <i>D. melanogaster</i> protein and is supported by RNA-Seq coverage, the lack of splice junction predictions, and multiple gene predictors. The first intron in both isoforms of <i>D. kikkawaiash1</i> contains a well conserved non-canonical GC splice site.</p>\",\"PeriodicalId\":74192,\"journal\":{\"name\":\"microPublication biology\",\"volume\":\"2024 \",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-11-22\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11624501/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"microPublication biology\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.17912/micropub.biology.001322\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"microPublication biology","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.17912/micropub.biology.001322","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

基因编号为 108083276 的 kikkawai 果蝇特征被确定为黑腹果蝇无盘、小盘或同源盘 1 ( ash1 ) 的直向同源物。利用 GEP 注释协议在 D. kikkawai Muller D 元素上构建了两个同源物,即 ash1-PB 和 ash1-PC。与 D. melanogaster 蛋白相比,D. kikkawai ash1 的第二个编码外显子包括一个插入物,可翻译成 18 个额外的氨基酸,这一点得到了 RNA-Seq 覆盖率、剪接接头预测缺失以及多个基因预测因子的支持。D. kikkawai ash1 两种异构体的第一个内含子都包含一个保守的非规范 GC 剪接位点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Drosophila kikkawai ortholog of the D. melanogaster Muller D element ash1.

The Drosophila kikkawai feature with Gene ID 108083276 was determined to be an ortholog of Drosophila melanogaster absent, small, or homeotic discs 1 ( ash1 ). Two isoforms, ash1-PB and ash1-PC, were constructed on the D. kikkawai Muller D element using the GEP annotation protocol. The second coding exon of D. kikkawai ash1 includes an insertion translated into 18 additional amino acids compared to the D. melanogaster protein and is supported by RNA-Seq coverage, the lack of splice junction predictions, and multiple gene predictors. The first intron in both isoforms of D. kikkawaiash1 contains a well conserved non-canonical GC splice site.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
审稿时长
3 weeks
期刊最新文献
Erratum: Corrigendum: tRNA Arg binds in vitro TDP-43 RNA recognition motifs and ligand of Ate1 protein LIAT1. Dafadine Does Not Promote Dauer Development in Pristionchus pacificus. Alpha-Synuclein Fails to Form Aggregates in Endocytosis-Defective Fission Yeast Strains, ∆ myo1 and ∆ end4. Comparing simulations of actin filament compression reveals tradeoff between computational cost and capturing supertwist. Low-fecundity dhc-1; mel-28 C. elegans mutants do not have gonad mitosis defects.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1