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Alternative mating pattern in Enoploteuthis chunii is associated with polyandry and male-biased sex ratio.
Pub Date : 2025-01-08 eCollection Date: 2025-01-01 DOI: 10.17912/micropub.biology.001424
Yuu Moriwaki, Satoshi Kusama, Anri Yamane, Md Nur E Alam, Noriyosi Sato, Noritaka Hirohashi

Although cephalopods are primarily polyandrous, genetic evidence revealed rare monogamy in Watasenia scintillans . Here, we studied the sister species Enoploteuthis chunii . We found that copulation began in early July, with egg spawning occurring in early August. The sex ratio was female-biased until late August, then shifted to male-biased. After early August, the average number of sperm sacs in females exceeded that of males. As the season progresses, females began storing sperm sacs in a cryptic sperm pocket on the right lateral trunk within the mantle. This behavior is associated with male-biased sex ratio. These results suggest polyandry in E. chunii.

{"title":"Alternative mating pattern in <i>Enoploteuthis chunii</i> is associated with polyandry and male-biased sex ratio.","authors":"Yuu Moriwaki, Satoshi Kusama, Anri Yamane, Md Nur E Alam, Noriyosi Sato, Noritaka Hirohashi","doi":"10.17912/micropub.biology.001424","DOIUrl":"10.17912/micropub.biology.001424","url":null,"abstract":"<p><p>Although cephalopods are primarily polyandrous, genetic evidence revealed rare monogamy in <i>Watasenia scintillans</i> . Here, we studied the sister species <i>Enoploteuthis chunii</i> . We found that copulation began in early July, with egg spawning occurring in early August. The sex ratio was female-biased until late August, then shifted to male-biased. After early August, the average number of sperm sacs in females exceeded that of males. As the season progresses, females began storing sperm sacs in a cryptic sperm pocket on the right lateral trunk within the mantle. This behavior is associated with male-biased sex ratio. These results suggest polyandry in <i>E. chunii.</i></p>","PeriodicalId":74192,"journal":{"name":"microPublication biology","volume":"2025 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11755135/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143030334","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome Sequence of Gordonia terrae Bacteriophage Wheezy.
Pub Date : 2025-01-07 eCollection Date: 2025-01-01 DOI: 10.17912/micropub.biology.001407
Rachel M Heyne, Catherine P Chia

Bacteriophage Wheezy, a lytic phage with siphoviral morphology isolated using the host Gordonia terrae 3612, has a genome of 67,021 base pairs and is 65.9% GC. The genome sequence of Wheezy aligns most closely with subcluster CR2 phages Tracker and NatB6. Annotation of the full-length genome sequence of Phage Wheezy revealed 92 protein-coding genes and no tRNA genes.

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引用次数: 0
The lim-7p::ced-1::GFP transgene from the MD701 strain increases embryonic lethality in C. elegans.
Pub Date : 2025-01-07 eCollection Date: 2025-01-01 DOI: 10.17912/micropub.biology.001420
Nina M Zampetti, Kristen A Quaglia, Lisa N Petrella

The lim-7p::ced-1::GFP transgene has been widely used for evaluating germline apoptosis in C. elegans . Here we observed an increase in embryonic lethality in the MD701 strain that contains the lim-7p::ced-1::GFP transgene and a strain that outcrossed the lim-7p::ced-1::GFP transgene into the N2 wild-type strain. While the outcrossed strain had a significantly lower level of embryonic lethality than MD701, it still showed significantly higher embryonic lethality than wild type. Our results suggest that the presence of the lim-7p::ced-1::GFP transgene significantly increases embryonic lethality, but there may also be a secondary mutation in the MD701 strain that further increases embryonic lethality.

{"title":"The <i>lim-7p::ced-1::GFP</i> transgene from the MD701 strain increases embryonic lethality in <i>C. elegans</i>.","authors":"Nina M Zampetti, Kristen A Quaglia, Lisa N Petrella","doi":"10.17912/micropub.biology.001420","DOIUrl":"10.17912/micropub.biology.001420","url":null,"abstract":"<p><p>The <i>lim-7p::ced-1::GFP</i> transgene has been widely used for evaluating germline apoptosis in <i>C. elegans</i> . Here we observed an increase in embryonic lethality in the MD701 strain that contains the <i>lim-7p::ced-1::GFP</i> transgene and a strain that outcrossed the <i>lim-7p::ced-1::GFP</i> transgene into the N2 wild-type strain. While the outcrossed strain had a significantly lower level of embryonic lethality than MD701, it still showed significantly higher embryonic lethality than wild type. Our results suggest that the presence of the <i>lim-7p::ced-1::GFP</i> transgene significantly increases embryonic lethality, but there may also be a secondary mutation in the MD701 strain that further increases embryonic lethality.</p>","PeriodicalId":74192,"journal":{"name":"microPublication biology","volume":"2025 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11751725/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143026138","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CEP44 and CCDC15 label the spermatozoa proximal and atypical distal centrioles.
Pub Date : 2025-01-07 eCollection Date: 2025-01-01 DOI: 10.17912/micropub.biology.001393
Luke Achinger, Briggs Hehl, Jason Suh, Samantha B Schon, Nagalakshmi Nadiminty, Tariq A Shah, Puneet Sindhwani, Tomer Avidor-Reiss

The centrosome is a conserved characteristic of eukaryotic and human cells but is highly specialized in reproductive cells. The spermatozoan centrosome includes a slightly modified proximal centriole, an atypical distal centriole, and specialized pericentriolar material, including striated columns and capitellum. We investigated the localization of canonical centriolar proteins CEP44 and CCDC15 in human spermatozoa. We found that CEP44 localizes mainly at the proximal centriole and distal centriole bases relative to centrin. CCDC15 colocalizes with centrin in both the proximal centriole and distal centriole. These findings further our understanding of the spermatozoan centrosome composition.

{"title":"CEP44 and CCDC15 label the spermatozoa proximal and atypical distal centrioles.","authors":"Luke Achinger, Briggs Hehl, Jason Suh, Samantha B Schon, Nagalakshmi Nadiminty, Tariq A Shah, Puneet Sindhwani, Tomer Avidor-Reiss","doi":"10.17912/micropub.biology.001393","DOIUrl":"10.17912/micropub.biology.001393","url":null,"abstract":"<p><p>The centrosome is a conserved characteristic of eukaryotic and human cells but is highly specialized in reproductive cells. The spermatozoan centrosome includes a slightly modified proximal centriole, an atypical distal centriole, and specialized pericentriolar material, including striated columns and capitellum. We investigated the localization of canonical centriolar proteins CEP44 and CCDC15 in human spermatozoa. We found that CEP44 localizes mainly at the proximal centriole and distal centriole bases relative to centrin. CCDC15 colocalizes with centrin in both the proximal centriole and distal centriole. These findings further our understanding of the spermatozoan centrosome composition.</p>","PeriodicalId":74192,"journal":{"name":"microPublication biology","volume":"2025 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11751728/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143026119","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Gene model for the ortholog of Glys in Drosophila simulans.
Pub Date : 2025-01-07 eCollection Date: 2025-01-01 DOI: 10.17912/micropub.biology.001168
Madeline L Gruys, Madison A Sharp, Zachary Lill, Caroline Xiong, Amy T Hark, James J Youngblom, Chinmay P Rele, Laura K Reed

Gene model for the ortholog of glycogen synthase ( Glys ) in the Drosophila simulans May 2017 (Princeton ASM75419v2/DsimGB2) Genome Assembly (GenBank Accession: GCA_000754195.3 ). This ortholog was characterized as part of a developing dataset to study the evolution of the Insulin/insulin-like growth factor signaling pathway (IIS) across the genus Drosophila using the Genomics Education Partnership gene annotation protocol for Course-based Undergraduate Research Experiences.

{"title":"Gene model for the ortholog of <i>Glys</i> in <i>Drosophila simulans</i>.","authors":"Madeline L Gruys, Madison A Sharp, Zachary Lill, Caroline Xiong, Amy T Hark, James J Youngblom, Chinmay P Rele, Laura K Reed","doi":"10.17912/micropub.biology.001168","DOIUrl":"10.17912/micropub.biology.001168","url":null,"abstract":"<p><p>Gene model for the ortholog of glycogen synthase ( <i>Glys</i> ) in the <i>Drosophila simulans</i> May 2017 (Princeton ASM75419v2/DsimGB2) Genome Assembly (GenBank Accession: GCA_000754195.3 ). This ortholog was characterized as part of a developing dataset to study the evolution of the Insulin/insulin-like growth factor signaling pathway (IIS) across the genus <i>Drosophila</i> using the Genomics Education Partnership gene annotation protocol for Course-based Undergraduate Research Experiences.</p>","PeriodicalId":74192,"journal":{"name":"microPublication biology","volume":"2025 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11751727/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143026122","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Dopaminergic neurodegeneration in C. elegans cultivated with Porphorymonas gingivalis. 用牙龈卟啉单胞菌培养秀丽隐杆线虫的多巴胺能神经变性。
Pub Date : 2025-01-06 eCollection Date: 2025-01-01 DOI: 10.17912/micropub.biology.001423
Edward F Griffin, Madeline G Owens

Disruption of the human microbiome has emerged as a major contributing factor in the etiology of neurodegenerative disease. Previous work suggests a positive correlation between periodontal inflammation and Parkinson's disease. Here, we show that feeding C. elegans animals Porphorymonas gingivalis causes neurodegeneration that is not additive with neurodegeneration induced by the Parkinson's-associated protein, α-synuclein. In contrast, α-synuclein-expressing animals fed P. gingivalis show additional disruption in basal slowing, suggesting that P. gingivalis induces neurodegeneration while altering neuronal function of extant neurons. Though the mechanism is unclear, these results suggest a relationship between P. gingivalis and neurodegeneration that warrants further investigation.

人类微生物组的破坏已成为神经退行性疾病病因学的主要促成因素。先前的研究表明牙周炎症与帕金森病呈正相关。在这里,我们发现喂养秀丽隐杆线虫动物的牙龈卟啉单胞菌会导致神经退行性变,而这种退行性变与帕金森相关蛋白α-突触核蛋白诱导的神经退行性变无关。相比之下,α-突触核蛋白表达的动物喂食牙龈假单胞菌后,基底慢化受到额外破坏,这表明牙龈假单胞菌在改变现存神经元功能的同时诱导神经变性。虽然机制尚不清楚,但这些结果表明牙龈卟啉卟啉与神经变性之间的关系值得进一步研究。
{"title":"Dopaminergic neurodegeneration in <i>C. elegans</i> cultivated with <i>Porphorymonas gingivalis</i>.","authors":"Edward F Griffin, Madeline G Owens","doi":"10.17912/micropub.biology.001423","DOIUrl":"10.17912/micropub.biology.001423","url":null,"abstract":"<p><p>Disruption of the human microbiome has emerged as a major contributing factor in the etiology of neurodegenerative disease. Previous work suggests a positive correlation between periodontal inflammation and Parkinson's disease. Here, we show that feeding <i>C. elegans</i> animals <i>Porphorymonas gingivalis</i> causes neurodegeneration that is not additive with neurodegeneration induced by the Parkinson's-associated protein, α-synuclein. In contrast, α-synuclein-expressing animals fed <i>P. gingivalis</i> show additional disruption in basal slowing, suggesting that <i>P. gingivalis</i> induces neurodegeneration while altering neuronal function of extant neurons. Though the mechanism is unclear, these results suggest a relationship between <i>P. gingivalis</i> and neurodegeneration that warrants further investigation.</p>","PeriodicalId":74192,"journal":{"name":"microPublication biology","volume":"2025 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11749262/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143017450","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Voluntary intake of non-caloric sweetener drives conditioned bottle-position preference in mice. 自愿摄入无热量甜味剂驱动小鼠对瓶子位置的条件偏好。
Pub Date : 2025-01-06 eCollection Date: 2025-01-01 DOI: 10.17912/micropub.biology.001459
Daisuke H Tanaka, Tsutomu Tanabe

The present study investigated whether saccharin, a non-caloric sweetener, induces conditioned bottle-position preference in mice. In a two-bottle preference test, the mice initially preferred water from a specific side. When saccharin was introduced on the opposite side, the mice showed increased total intake and a preference for the position of the saccharin bottle. After saccharin removal, the preference for the saccharin-associated position persisted for one day but disappeared by the next day. These findings suggest that saccharin intake drives associative learning between its presence and bottle position, influencing subsequent decision-making and motivation to consume from the previously saccharin-associated position.

本研究调查了糖精,一种无热量的甜味剂,是否诱导小鼠的条件瓶位偏好。在两瓶偏好测试中,小鼠最初更喜欢特定一侧的水。当糖精从另一侧注入时,小鼠的总摄入量增加,并对糖精瓶的位置有偏好。去除糖精后,对糖精相关位置的偏好持续了一天,但第二天就消失了。这些发现表明,糖精的摄入推动了糖精存在和瓶子位置之间的联想学习,影响了随后的决策和从先前与糖精相关的位置消费的动机。
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引用次数: 0
Genome Sequence of Three Siphoviruses in the EE, GA and EA5 Actinobacteriophage Clusters: Biscayne, Bush and GreenIvy. Biscayne, Bush和GreenIvy放线菌噬菌体群EE, GA和EA5中三种siphovirus的基因组序列
Pub Date : 2025-01-06 eCollection Date: 2025-01-01 DOI: 10.17912/micropub.biology.001397
Xavier S Purroy, Betty R Sierra, Lara Becerra Reymundo, Victoria M Serradet, Alejandra M Camacho, Nicole A Briceno, Katherine Artiles, Pooja Lad, Nhan Phan, Alison Rodriguez Leiva, Jazlyn N Appolon, Akram Mikhail, Arianna M Ruiz, Carlos Rodriguez, David Vega, Gabriela Moyano, Grace Intrator, Kiryl Yasinski, Kristen Mclean, Nicole Gonzalez Giliberti, Erika Ramirez Ramirez, Victor Adolpho de Melo, Alexandra S Alsina, Maria Y Andino, Brian A Becker, Hillary Castellanos, Natalia A Castillo, Brandon S Fernandez, Jeremiah R Estinvil, Amanda A Gonzalez, Emily M Hernandez, Ayden Ho, Sheikh F Islam, Anna Liubenco, Lance Mejia, Sandra N Meesala, William Morales-Ramirez, Nathalie Morlote, Kevin Ramos-Homs, Jorge A Rodriguez, Leydis M Torres, Patricia Waikel, Jaime Mayoral

Bacteriophages Biscayne, Bush and GreenIvy were isolated from soil samples in Miami, FL using Microbacterium foliorum NRRL B-24224 as host. Transmission electron microscopy shows siphoviral morphologies for all three phages. Based on gene content similarity to other actinobacteriophages, they are assigned to the EE, GA and EA5 clusters, respectively.

以叶状微杆菌NRRL B-24224为寄主,从佛罗里达州迈阿密的土壤样品中分离到噬菌体Biscayne、Bush和GreenIvy。透射电镜显示所有三种噬菌体的虹膜病毒形态。根据与其他放线菌噬菌体基因含量的相似性,它们分别被划分为EE、GA和EA5簇。
{"title":"Genome Sequence of Three Siphoviruses in the EE, GA and EA5 Actinobacteriophage Clusters: Biscayne, Bush and GreenIvy.","authors":"Xavier S Purroy, Betty R Sierra, Lara Becerra Reymundo, Victoria M Serradet, Alejandra M Camacho, Nicole A Briceno, Katherine Artiles, Pooja Lad, Nhan Phan, Alison Rodriguez Leiva, Jazlyn N Appolon, Akram Mikhail, Arianna M Ruiz, Carlos Rodriguez, David Vega, Gabriela Moyano, Grace Intrator, Kiryl Yasinski, Kristen Mclean, Nicole Gonzalez Giliberti, Erika Ramirez Ramirez, Victor Adolpho de Melo, Alexandra S Alsina, Maria Y Andino, Brian A Becker, Hillary Castellanos, Natalia A Castillo, Brandon S Fernandez, Jeremiah R Estinvil, Amanda A Gonzalez, Emily M Hernandez, Ayden Ho, Sheikh F Islam, Anna Liubenco, Lance Mejia, Sandra N Meesala, William Morales-Ramirez, Nathalie Morlote, Kevin Ramos-Homs, Jorge A Rodriguez, Leydis M Torres, Patricia Waikel, Jaime Mayoral","doi":"10.17912/micropub.biology.001397","DOIUrl":"10.17912/micropub.biology.001397","url":null,"abstract":"<p><p>Bacteriophages Biscayne, Bush and GreenIvy were isolated from soil samples in Miami, FL using <i>Microbacterium foliorum</i> NRRL B-24224 as host. Transmission electron microscopy shows siphoviral morphologies for all three phages. Based on gene content similarity to other actinobacteriophages, they are assigned to the EE, GA and EA5 clusters, respectively.</p>","PeriodicalId":74192,"journal":{"name":"microPublication biology","volume":"2025 ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2025-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11749239/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143017640","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome sequence of WestPM, a phage infecting Microbacterium foliorum isolated from beach environmental samples. 海滩环境样品中感染叶状微杆菌的噬菌体WestPM的基因组序列。
Pub Date : 2025-01-04 eCollection Date: 2025-01-01 DOI: 10.17912/micropub.biology.001395
Charles J West, Brittany C Yencho, Andrew J Brown, Conor R Flannigan, Hui-Min Chung

Bacteriophage WestPM is a siphoviral-like phage infecting Microbacterium foliorum isolated from environmental samples collected on Pensacola Beach, FL. The genome of this phage is 39,693 bp long and contains 59 predicted protein-coding genes and zero tRNA genes. Based on gene content similarity, WestPM is grouped in the actinobacteriophage EA11 subcluster.

噬菌体WestPM是一种感染叶状微杆菌的siphoavirus样噬菌体,从佛罗里达州Pensacola Beach采集的环境样本中分离出来。该噬菌体的基因组长39,693 bp,包含59个预测的蛋白质编码基因和零tRNA基因。基于基因内容相似性,WestPM被归入放线菌噬菌体EA11亚群。
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引用次数: 0
Complete Genome Sequence of the Cluster DJ Actinobacteriophage, Petito, isolated on the host Gordonia rubripertinca. 宿主红带戈登菌(Gordonia rubripertinca)上分离的DJ簇放线菌噬菌体Petito的全基因组序列
Pub Date : 2025-01-03 eCollection Date: 2025-01-01 DOI: 10.17912/micropub.biology.001456
Elliot Benson, Micah Blount, Shria Chauhan, Jayden Ehrhart, Adelinn Foster, Abigail Ingber, Madeline Julian, Derika Kwansah, Trang Le, Emily May, Elizabeth Mazel, Esther Morency, Sierra Nelson, Casey O'Toole, Kaitlin Potter, Leandra Vita, Kirra Weigand, Denise Monti

Gordonia phage Petito is a newly discovered siphovirus that infects Gordonia rubripertincta NRRL B-16540. The double-stranded DNA genome of this phage is 60,447 bp long with 93 predicted protein-coding genes and no tRNAs. Petito is a Cluster DJ phage.

Gordonia phage Petito是一种新发现的感染Gordonia rubripertincta NRRL B-16540的siphov病毒。该噬菌体的双链DNA基因组长60,447 bp,有93个预测的蛋白质编码基因,没有trna。Petito是一个Cluster DJ噬菌体。
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