Huanhuan Chen, Nawaz Haider Bashir, Lei Zhu, Tong-Xing Zhao, Tao Xu, Yong Gao, Yong-Kang Sima
{"title":"稀有物种五味子（五味子科）叶绿体全基因组及系统发育分析。","authors":"Huanhuan Chen, Nawaz Haider Bashir, Lei Zhu, Tong-Xing Zhao, Tao Xu, Yong Gao, Yong-Kang Sima","doi":"10.1080/23802359.2024.2437099","DOIUrl":null,"url":null,"abstract":"<p><p><i>Schisandra macrocarpa</i> Lin & Shui, 2011, belongs to the family Schisandraceae and was recently added to the List of National Key Protected Wild Plants in China. We report the complete chloroplast (cp) genome of <i>S. macrocarpa</i> using Illumina Nova-Seq 6000 platform. The results showed that the cp genome size of <i>S. macrocarpa</i> was 144,288 bp, which contained a small single-copy (SSC) region (17,862 bp), a large single-copy (LSC) region (93,332 bp), and a pair of inverted repeat (IR) regions (16,547 bp). The cp genome has 40% overall GC content. Annotated genes were 128 in all, including 83 protein-coding genes, eight rRNA genes, and 37 tRNA genes. The phylogenetic analysis showed that <i>S. macrocarpa</i> was closely related to <i>S. propinqua</i> subsp<i>. sinensis</i>. This work contributes to the conservation of this species and the evolutionary analysis of Schisandraceae.</p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"9 12","pages":"1693-1697"},"PeriodicalIF":0.5000,"publicationDate":"2024-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11648132/pdf/","citationCount":"0","resultStr":"{\"title\":\"The complete chloroplast genome and phylogenetic analysis of a rare species <i>Schisandra macrocarpa</i> (Schisandraceae).\",\"authors\":\"Huanhuan Chen, Nawaz Haider Bashir, Lei Zhu, Tong-Xing Zhao, Tao Xu, Yong Gao, Yong-Kang Sima\",\"doi\":\"10.1080/23802359.2024.2437099\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>Schisandra macrocarpa</i> Lin & Shui, 2011, belongs to the family Schisandraceae and was recently added to the List of National Key Protected Wild Plants in China. We report the complete chloroplast (cp) genome of <i>S. macrocarpa</i> using Illumina Nova-Seq 6000 platform. The results showed that the cp genome size of <i>S. macrocarpa</i> was 144,288 bp, which contained a small single-copy (SSC) region (17,862 bp), a large single-copy (LSC) region (93,332 bp), and a pair of inverted repeat (IR) regions (16,547 bp). The cp genome has 40% overall GC content. Annotated genes were 128 in all, including 83 protein-coding genes, eight rRNA genes, and 37 tRNA genes. The phylogenetic analysis showed that <i>S. macrocarpa</i> was closely related to <i>S. propinqua</i> subsp<i>. sinensis</i>. This work contributes to the conservation of this species and the evolutionary analysis of Schisandraceae.</p>\",\"PeriodicalId\":18647,\"journal\":{\"name\":\"Mitochondrial DNA. Part B, Resources\",\"volume\":\"9 12\",\"pages\":\"1693-1697\"},\"PeriodicalIF\":0.5000,\"publicationDate\":\"2024-12-12\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11648132/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Mitochondrial DNA. Part B, Resources\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1080/23802359.2024.2437099\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q4\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Mitochondrial DNA. Part B, Resources","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1080/23802359.2024.2437099","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"Q4","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
The complete chloroplast genome and phylogenetic analysis of a rare species Schisandra macrocarpa (Schisandraceae).
Schisandra macrocarpa Lin & Shui, 2011, belongs to the family Schisandraceae and was recently added to the List of National Key Protected Wild Plants in China. We report the complete chloroplast (cp) genome of S. macrocarpa using Illumina Nova-Seq 6000 platform. The results showed that the cp genome size of S. macrocarpa was 144,288 bp, which contained a small single-copy (SSC) region (17,862 bp), a large single-copy (LSC) region (93,332 bp), and a pair of inverted repeat (IR) regions (16,547 bp). The cp genome has 40% overall GC content. Annotated genes were 128 in all, including 83 protein-coding genes, eight rRNA genes, and 37 tRNA genes. The phylogenetic analysis showed that S. macrocarpa was closely related to S. propinqua subsp. sinensis. This work contributes to the conservation of this species and the evolutionary analysis of Schisandraceae.
期刊介绍：
This open access journal publishes high-quality and concise research articles reporting the sequence of full mitochondrial genomes, and short communications focusing on the physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism and interactions.
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