微型电子转移蛋白METPsc1的温度依赖动力学的结构见解。

IF 3.8 2区 化学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Journal of Inorganic Biochemistry Pub Date : 2025-03-01 Epub Date: 2024-12-09 DOI:10.1016/j.jinorgbio.2024.112810
Luigi F Di Costanzo, Gianmattia Sgueglia, Carla Orlando, Maurizio Polentarutti, Linda Leone, Salvatore La Gatta, Maria De Fenza, Luca De Gioia, Angela Lombardi, Federica Arrigoni, Marco Chino
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引用次数: 0

摘要

蛋白质-金属配合物的设计正在迅速发展,其应用跨越催化、传感和生物修复。我们报道了一项全面的研究,METPsc1,一个小型化的电子转移蛋白,在配合镉。本研究阐明了金属配位对蛋白质折叠和结构动力学的影响,温度范围从100 K到300 K。我们的研究结果表明,METPsc1由分子内氢键稳定的两个相似的半部分组成,表现出独特的“衣夹样”反冲机制。这使得它能够适应不同半径的金属离子,反映了在天然红霉素中观察到的灵活性。高分辨率晶体学和分子动力学模拟揭示了协调一致的骨干运动和微妙的温度依赖侧链构象的变化,特别是涉及晶体包装的残基。值得注意的是,CdS键长随着温度的升高而增加,这与参与第二壳层氢键的硫原子的各向异性运动有关。这表明蛋白质基质在氧化还原循环中的动态作用。这些对METPsc1的认识突出了其催化作用的潜力,并有助于设计具有功能可塑性的人造金属蛋白。
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Structural insights into temperature-dependent dynamics of METPsc1, a miniaturized electron-transfer protein.

The design of protein-metal complexes is rapidly advancing, with applications spanning catalysis, sensing, and bioremediation. We report a comprehensive investigation of METPsc1, a Miniaturized Electron Transfer Protein, in complex with cadmium. This study elucidates the impact of metal coordination on protein folding and structural dynamics across temperatures from 100 K to 300 K. Our findings reveal that METPsc1, composed of two similar halves stabilized by intramolecular hydrogen bonds, exhibits a unique "clothespin-like" recoil mechanism. This allows it to adapt to metal ions of varying radii, mirroring the flexibility observed in natural rubredoxins. High-resolution crystallography and molecular dynamics simulations unveil concerted backbone motions and subtle temperature-dependent shifts in side-chain conformations, particularly for residues involved in crystal packing. Notably, CdS bond lengths increase with temperature, correlating with anisotropic motions of the sulfur atoms involved in second-shell hydrogen bonding. This suggests a dynamic role of protein matrix upon redox cycling. These insights into METPsc1 highlight its potential for catalysis and contribute to the designing of artificial metalloproteins with functional plasticity.

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来源期刊
Journal of Inorganic Biochemistry
Journal of Inorganic Biochemistry 生物-生化与分子生物学
CiteScore
7.00
自引率
10.30%
发文量
336
审稿时长
41 days
期刊介绍: The Journal of Inorganic Biochemistry is an established international forum for research in all aspects of Biological Inorganic Chemistry. Original papers of a high scientific level are published in the form of Articles (full length papers), Short Communications, Focused Reviews and Bioinorganic Methods. Topics include: the chemistry, structure and function of metalloenzymes; the interaction of inorganic ions and molecules with proteins and nucleic acids; the synthesis and properties of coordination complexes of biological interest including both structural and functional model systems; the function of metal- containing systems in the regulation of gene expression; the role of metals in medicine; the application of spectroscopic methods to determine the structure of metallobiomolecules; the preparation and characterization of metal-based biomaterials; and related systems. The emphasis of the Journal is on the structure and mechanism of action of metallobiomolecules.
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