Long Guo, Na Chen, Mei Qiu, Juliang Yang, Min Zhou, Fei Liu
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引用次数: 0
摘要
背景:免疫原性细胞死亡(ICD)已被证实是一种调节性细胞死亡(RCD)。膀胱癌(BC)是一种常见的恶性肿瘤,在全球肿瘤流行病学发病率中排名第十。我们进行这项研究是为了了解ICD和BC之间的关系,并有利于临床实践。方法:从The Cancer Genome Atlas (TCGA)和Gene Expression Omnibus (GEO)数据库下载患者的转录组和临床分析、突变数据。通过共识聚类将BC患者分为icd高危亚组和低危亚组。利用功能富集、体细胞突变分析、基因本体(GO)和京都基因与基因组百科全书(KEGG)来探索潜在的机制。通过最小绝对收缩和选择算子(LASSO)回归分析构建了icd相关的风险特征。采用免疫浸润法和多重免疫荧光染色法对BC微环境进行验证。综述了免疫景观,以显示免疫治疗的潜力。结果:BC与正常组织中icd相关基因共有18个差异表达。在TCGA BC队列中,我们确定了两个簇,并将BC患者分为icd高亚组和低亚组。icd高亚组临床预后较差,突变谱不同,功能富集程度不同,免疫浸润程度较高,免疫治疗反应较好。建立了由7个icd相关基因组成的icd相关风险标记,并通过LASSO Cox回归显示出对预后的出色预测能力。结论:建立了与icd相关的风险特征,为准确预测BC患者的预后提供了一个有希望的分类系统。该特征为BC的免疫治疗提供了一种新的策略。
Immunogenic cell death-related signature predicts prognosis and immunotherapy efficacy in bladder cancer.
Background: Immunogenic cell death (ICD) has been verified as a modality of regulated cell death (RCD). Bladder cancer (BC) is a common malignant tumor and ranks tenth in the incidence of global tumor epidemiology. We conducted this study to understand the relationship between ICD and BC and benefit clinical practice.
Methods: Transcriptome and clinical profiling, mutational data of patients were downloaded from The Cancer Genome Atlas (TCGA) and the Gene Expression Omnibus (GEO) database. BC patients were divided into ICD-high and -low risk subgroups via consensus clusters. Functional enrichment, somatic mutation analysis, Gene Ontology (GO), and Kyoto Encyclopedia of Genes and Genomes (KEGG) were used to explore the potential mechanism. An ICD-related risk signature was constructed via least absolute shrinkage and selection operator (LASSO) regression analysis. Immune infiltration was investigated and multiplexed immunofluorescence staining was used to validate the BC microenvironment. Immune landscape was summarized to show the potential of immunotherapy.
Results: A total of 18 differentially expressed ICD-related genes in BC were distinguished from normal tissue. We identified two clusters and BC patients were divided into ICD-high and -low subgroups in the TCGA BC cohort. The ICD-high subgroup exhibited worse clinical outcomes, different mutation profiles, different functional enrichment, higher immune infiltration, and better immunotherapy response. An ICD-related risk signature made of seven ICD-related genes was established and shown to have outstanding predictive power of prognosis via LASSO Cox regression.
Conclusions: An ICD-related risk signature was established that provides a promising classification system to predict the prognosis in BC patients accurately. The signature provides a novel strategy for immunotherapy of BC.
期刊介绍:
Translational Cancer Research (Transl Cancer Res TCR; Print ISSN: 2218-676X; Online ISSN 2219-6803; http://tcr.amegroups.com/) is an Open Access, peer-reviewed journal, indexed in Science Citation Index Expanded (SCIE). TCR publishes laboratory studies of novel therapeutic interventions as well as clinical trials which evaluate new treatment paradigms for cancer; results of novel research investigations which bridge the laboratory and clinical settings including risk assessment, cellular and molecular characterization, prevention, detection, diagnosis and treatment of human cancers with the overall goal of improving the clinical care of cancer patients. The focus of TCR is original, peer-reviewed, science-based research that successfully advances clinical medicine toward the goal of improving patients'' quality of life. The editors and an international advisory group of scientists and clinician-scientists as well as other experts will hold TCR articles to the high-quality standards. We accept Original Articles as well as Review Articles, Editorials and Brief Articles.