机器学习辅助下多酶活性掺杂纳米酶的设计与性能分析。

IF 5.4 2区 医学 Q1 BIOPHYSICS Colloids and Surfaces B: Biointerfaces Pub Date : 2025-04-01 Epub Date: 2024-12-19 DOI:10.1016/j.colsurfb.2024.114468
Fuguo Ge, Yonghui Gao, Yujie Jiang, Yijie Yu, Qiang Bai, Yun Liu, HuiBin Li, Ning Sui
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引用次数: 0

摘要

传统的纳米酶设计方法通常依赖于经验方法和试错法,这阻碍了对其结构和性能的系统优化,从而限制了开发创新纳米酶的效率。本研究利用高通量计算支持的机器学习技术,有效地设计具有多酶活性的纳米酶,并阐明其反应机制。此外,研究了掺杂剂对纳米酶微物理性质的影响。我们构建了一个机器学习预测框架,专门针对具有催化活性的掺杂纳米酶,如氧化酶(OXD)和过氧化物酶(POD)。该框架通过密度泛函理论(DFT)计算来评估关键的催化性能参数,如地层能、态密度(DOS)和吸附能。采用不同的机器学习模型来预测不同掺杂元素比例对纳米酶催化活性和稳定性的影响。结果表明,机器学习与高通量计算的结合显著加快了掺杂纳米酶的设计和优化,为解决纳米酶设计的复杂性提供了一种有效的策略。该方法不仅提高了材料设计创新的效率和能力,而且为新型功能材料的开发提供了新的理论分析途径。
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Design and performance analysis of multi-enzyme activity-doped nanozymes assisted by machine learning.

Traditional design approaches for nanozymes typically rely on empirical methods and trial-and-error, which hampers systematic optimization of their structure and performance, thus limiting the efficiency of developing innovative nanozymes. This study leverages machine learning techniques supported by high-throughput computations to effectively design nanozymes with multi-enzyme activities and to elucidate their reaction mechanisms. Additionally, it investigates the impact of dopants on the microphysical properties of nanozymes. We constructed a machine learning prediction framework tailored for dopant nanozymes exhibiting catalytic activities like to oxidase (OXD) and peroxidase (POD). This framework was used to evaluate key catalytic performance parameters, such as formation energy, density of states (DOS), and adsorption energy, through density functional theory (DFT) calculations. Various machine learning models were employed to predict the effects of different doping element ratios on the catalytic activity and stability of nanozymes. The results indicate that the combination of machine learning with high-throughput computations significantly accelerates the design and optimization of dopant nanozymes, providing an efficient strategy to address the complexities of nanozyme design. This approach not only boosts the efficiency and capability for innovation in material design but also provides a novel theoretical analytical avenue for the development of new functional materials.

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来源期刊
Colloids and Surfaces B: Biointerfaces
Colloids and Surfaces B: Biointerfaces 生物-材料科学:生物材料
CiteScore
11.10
自引率
3.40%
发文量
730
审稿时长
42 days
期刊介绍: Colloids and Surfaces B: Biointerfaces is an international journal devoted to fundamental and applied research on colloid and interfacial phenomena in relation to systems of biological origin, having particular relevance to the medical, pharmaceutical, biotechnological, food and cosmetic fields. Submissions that: (1) deal solely with biological phenomena and do not describe the physico-chemical or colloid-chemical background and/or mechanism of the phenomena, and (2) deal solely with colloid/interfacial phenomena and do not have appropriate biological content or relevance, are outside the scope of the journal and will not be considered for publication. The journal publishes regular research papers, reviews, short communications and invited perspective articles, called BioInterface Perspectives. The BioInterface Perspective provide researchers the opportunity to review their own work, as well as provide insight into the work of others that inspired and influenced the author. Regular articles should have a maximum total length of 6,000 words. In addition, a (combined) maximum of 8 normal-sized figures and/or tables is allowed (so for instance 3 tables and 5 figures). For multiple-panel figures each set of two panels equates to one figure. Short communications should not exceed half of the above. It is required to give on the article cover page a short statistical summary of the article listing the total number of words and tables/figures.
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