{"title":"大豆GLN基因家族的全基因组鉴定、表达及互作分析。","authors":"Xin Hao, Yiyan Zhang, Hui Zhang, Gang Yang, Zhou Liu, Huiwei Lv, Xiaomei Zhou","doi":"10.3390/cimb46120847","DOIUrl":null,"url":null,"abstract":"<p><p>As a globally significant economic crop, the seed size of soybean (<i>Glycine max</i> [L.] Merr.) is jointly regulated by internal genetic factors and external environmental signals. This study discovered that the GLN family proteins in soybean are similar to the KIX-PPD-MYC transcriptional repressor complex in Arabidopsis, potentially influencing seed size by regulating the expression of the downstream gene <i>GIF1</i>. Additionally, β-1,3-glucanase (βGlu) plays a crucial role in antifungal activity, cell composition, flower development, pollen development, abiotic resistance, seed germination, and maturation in soybean. Through a detailed analysis of the structure, chromosomal localization, phylogenetic relationships, and expression situations in different tissues at different stages of the soybean <i>GLN</i> gene family members, this research certifies a theoretical foundation for subsequent research on the biological functions of <i>GLN</i> genes in soybean. This research incorporated a comprehensive genomic identification and expression analysis of the <i>GLN</i> gene family in soybean. The results indicate that the 109 soybean <i>GLN</i> genes are unevenly distributed across soybean chromosomes and exhibit diverse expression patterns in different tissues, suggesting they may have distinct functions in soybean morphogenesis. GO enrichment analysis shows that the <i>GLN</i> gene family may participate in a variety of biological activities, cellular components, and molecular biological processes, particularly in catalytic activity, cellular components, and metabolic processes. These findings provide important information for comprehending the role of the <i>GLN</i> gene family in soybean and offer potential targets for molecular breeding of soybean.</p>","PeriodicalId":10839,"journal":{"name":"Current Issues in Molecular Biology","volume":"46 12","pages":"14154-14167"},"PeriodicalIF":2.8000,"publicationDate":"2024-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11674948/pdf/","citationCount":"0","resultStr":"{\"title\":\"Genome-Wide Identification, Expression and Interaction Analysis of <i>GLN</i> Gene Family in Soybean.\",\"authors\":\"Xin Hao, Yiyan Zhang, Hui Zhang, Gang Yang, Zhou Liu, Huiwei Lv, Xiaomei Zhou\",\"doi\":\"10.3390/cimb46120847\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>As a globally significant economic crop, the seed size of soybean (<i>Glycine max</i> [L.] Merr.) is jointly regulated by internal genetic factors and external environmental signals. This study discovered that the GLN family proteins in soybean are similar to the KIX-PPD-MYC transcriptional repressor complex in Arabidopsis, potentially influencing seed size by regulating the expression of the downstream gene <i>GIF1</i>. Additionally, β-1,3-glucanase (βGlu) plays a crucial role in antifungal activity, cell composition, flower development, pollen development, abiotic resistance, seed germination, and maturation in soybean. Through a detailed analysis of the structure, chromosomal localization, phylogenetic relationships, and expression situations in different tissues at different stages of the soybean <i>GLN</i> gene family members, this research certifies a theoretical foundation for subsequent research on the biological functions of <i>GLN</i> genes in soybean. This research incorporated a comprehensive genomic identification and expression analysis of the <i>GLN</i> gene family in soybean. The results indicate that the 109 soybean <i>GLN</i> genes are unevenly distributed across soybean chromosomes and exhibit diverse expression patterns in different tissues, suggesting they may have distinct functions in soybean morphogenesis. GO enrichment analysis shows that the <i>GLN</i> gene family may participate in a variety of biological activities, cellular components, and molecular biological processes, particularly in catalytic activity, cellular components, and metabolic processes. 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引用次数: 0
摘要
大豆作为全球重要的经济作物,其种子大小(Glycine max [L。[Merr.])受内部遗传因素和外部环境信号共同调控。本研究发现大豆中的GLN家族蛋白与拟南芥中的KIX-PPD-MYC转录抑制复合物相似,可能通过调节下游基因GIF1的表达来影响种子大小。此外,β-1,3-葡聚糖酶(βGlu)在大豆抗真菌活性、细胞组成、花发育、花粉发育、非生物抗性、种子萌发和成熟等方面起着至关重要的作用。本研究通过对大豆GLN基因家族成员的结构、染色体定位、系统发育关系及不同阶段在不同组织中的表达情况的详细分析,为后续研究大豆GLN基因的生物学功能提供理论基础。本研究对大豆GLN基因家族进行了全面的基因组鉴定和表达分析。结果表明,109个大豆GLN基因在大豆染色体上分布不均匀,在不同组织中表现出不同的表达模式,可能在大豆形态发生中具有不同的功能。GO富集分析表明,GLN基因家族可能参与多种生物活性、细胞组分和分子生物学过程,特别是在催化活性、细胞组分和代谢过程中。这些发现为了解GLN基因家族在大豆中的作用提供了重要信息,并为大豆分子育种提供了潜在靶点。
Genome-Wide Identification, Expression and Interaction Analysis of GLN Gene Family in Soybean.
As a globally significant economic crop, the seed size of soybean (Glycine max [L.] Merr.) is jointly regulated by internal genetic factors and external environmental signals. This study discovered that the GLN family proteins in soybean are similar to the KIX-PPD-MYC transcriptional repressor complex in Arabidopsis, potentially influencing seed size by regulating the expression of the downstream gene GIF1. Additionally, β-1,3-glucanase (βGlu) plays a crucial role in antifungal activity, cell composition, flower development, pollen development, abiotic resistance, seed germination, and maturation in soybean. Through a detailed analysis of the structure, chromosomal localization, phylogenetic relationships, and expression situations in different tissues at different stages of the soybean GLN gene family members, this research certifies a theoretical foundation for subsequent research on the biological functions of GLN genes in soybean. This research incorporated a comprehensive genomic identification and expression analysis of the GLN gene family in soybean. The results indicate that the 109 soybean GLN genes are unevenly distributed across soybean chromosomes and exhibit diverse expression patterns in different tissues, suggesting they may have distinct functions in soybean morphogenesis. GO enrichment analysis shows that the GLN gene family may participate in a variety of biological activities, cellular components, and molecular biological processes, particularly in catalytic activity, cellular components, and metabolic processes. These findings provide important information for comprehending the role of the GLN gene family in soybean and offer potential targets for molecular breeding of soybean.
期刊介绍:
Current Issues in Molecular Biology (CIMB) is a peer-reviewed journal publishing review articles and minireviews in all areas of molecular biology and microbiology. Submitted articles are subject to an Article Processing Charge (APC) and are open access immediately upon publication. All manuscripts undergo a peer-review process.