smCamera:用于单分子数据采集和数据分析的一体化软件包

IF 0.8 4区 物理与天体物理 Q3 PHYSICS, MULTIDISCIPLINARY Journal of the Korean Physical Society Pub Date : 2024-12-06 DOI:10.1007/s40042-024-01243-z
Kyung Suk Lee, Taekjip Ha
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引用次数: 0

摘要

在过去的几十年里,单分子方法的生物学应用迅速发展,具有显微镜和仪器专业知识的研究人员采用了这些技术,并进一步发展了这些技术。然而,实践单分子方法对大多数人来说仍然具有挑战性,因为需要昂贵的设备和仪器需求,以及复杂的数据采集和分析工作流程,包括多个步骤,每个步骤使用不同的软件。smCamera是一个一体化软件包,旨在缓解数据采集和分析的陡峭学习曲线。从记录电影到提取单分子荧光共振能量转移(smFRET)的时间序列,一切都可以在一个程序中完成,而无需任何额外的软件或编程语言。虽然smCamera之前没有发布过,但它已经分发,以促进smFRET实验的适应,并且已经有对该软件的支持请求。我们希望这项工作能够回答使用smCamera的研究人员的问题,并为新用户介绍和分发smCamera提供机会。
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smCamera: all-in-one software package for single-molecule data acquisition and data analysis

In the last decades, biological applications of single-molecule methods have grown rapidly and researchers with expertise in microscopy and instrumentation have adopted these techniques and advanced them even further. However, practicing single-molecule methods is still challenging for most because of the need for expensive equipments and instrumentation demands as well as complicated data acquisition and analysis workflow consisting of multiple steps using different software in each of them. smCamera is an all-in-one software package which aims to alleviate steep learning curves of the data acquisition and analysis. From recording movies through extraction of time series of single-molecule fluorescence resonance energy transfer (smFRET), everything can be done in a single program without any additional software or programming languages. Although smCamera has not been published before, it has been distributed to facilitate adaption of smFRET experiments and there has been requests for support for this software. We hope that this work answers questions from researchers using smCamera and also provides an opportunity to introduce and distribute smCamera for new users.

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来源期刊
Journal of the Korean Physical Society
Journal of the Korean Physical Society PHYSICS, MULTIDISCIPLINARY-
CiteScore
1.20
自引率
16.70%
发文量
276
审稿时长
5.5 months
期刊介绍: The Journal of the Korean Physical Society (JKPS) covers all fields of physics spanning from statistical physics and condensed matter physics to particle physics. The manuscript to be published in JKPS is required to hold the originality, significance, and recent completeness. The journal is composed of Full paper, Letters, and Brief sections. In addition, featured articles with outstanding results are selected by the Editorial board and introduced in the online version. For emphasis on aspect of international journal, several world-distinguished researchers join the Editorial board. High quality of papers may be express-published when it is recommended or requested.
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