{"title":"日本雪域特有种阴道堇菜（堇菜科）的叶绿体全基因组。","authors":"Yayoi Takahashi, Masato Fujiwara, Masaaki Ozeki, Masayuki U Saito, Takaya Iwasaki","doi":"10.1080/23802359.2024.2444595","DOIUrl":null,"url":null,"abstract":"<p><p><i>Viola vaginata</i>, a perennial herb in subsection <i>Stolonosae</i>, is endemic to the snowy mountainous regions on the Sea of Japan side of Japan. Its complete chloroplast genome was 156,056 bp in length, comprising one large single-copy region (86,407 bp), one small single-copy region (17,301 bp), and two inverted repeat regions (27,174 bp each). It contained 111 unique genes, including 77 protein-coding genes, 30 transfer RNA genes, and 4 ribosomal RNA genes. Phylogenetic analysis placed <i>V. vaginata</i> in a clade with subsection <i>Biobatae</i> species and some <i>Patellares</i> species, while other <i>Patellares</i> species formed a distinct clade, contrasting with previous nuclear ITS results. These findings highlight the phylogenetic complexity within <i>Viola.</i></p>","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 1","pages":"47-51"},"PeriodicalIF":0.5000,"publicationDate":"2024-12-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11703538/pdf/","citationCount":"0","resultStr":"{\"title\":\"The complete chloroplast genome of <i>Viola vaginata</i> (Violaceae), an endemic species of the snowy region in Japan.\",\"authors\":\"Yayoi Takahashi, Masato Fujiwara, Masaaki Ozeki, Masayuki U Saito, Takaya Iwasaki\",\"doi\":\"10.1080/23802359.2024.2444595\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>Viola vaginata</i>, a perennial herb in subsection <i>Stolonosae</i>, is endemic to the snowy mountainous regions on the Sea of Japan side of Japan. Its complete chloroplast genome was 156,056 bp in length, comprising one large single-copy region (86,407 bp), one small single-copy region (17,301 bp), and two inverted repeat regions (27,174 bp each). It contained 111 unique genes, including 77 protein-coding genes, 30 transfer RNA genes, and 4 ribosomal RNA genes. Phylogenetic analysis placed <i>V. vaginata</i> in a clade with subsection <i>Biobatae</i> species and some <i>Patellares</i> species, while other <i>Patellares</i> species formed a distinct clade, contrasting with previous nuclear ITS results. These findings highlight the phylogenetic complexity within <i>Viola.</i></p>\",\"PeriodicalId\":18647,\"journal\":{\"name\":\"Mitochondrial DNA. Part B, Resources\",\"volume\":\"10 1\",\"pages\":\"47-51\"},\"PeriodicalIF\":0.5000,\"publicationDate\":\"2024-12-24\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11703538/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Mitochondrial DNA. Part B, Resources\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1080/23802359.2024.2444595\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q4\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Mitochondrial DNA. Part B, Resources","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1080/23802359.2024.2444595","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q4","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
The complete chloroplast genome of Viola vaginata (Violaceae), an endemic species of the snowy region in Japan.
Viola vaginata, a perennial herb in subsection Stolonosae, is endemic to the snowy mountainous regions on the Sea of Japan side of Japan. Its complete chloroplast genome was 156,056 bp in length, comprising one large single-copy region (86,407 bp), one small single-copy region (17,301 bp), and two inverted repeat regions (27,174 bp each). It contained 111 unique genes, including 77 protein-coding genes, 30 transfer RNA genes, and 4 ribosomal RNA genes. Phylogenetic analysis placed V. vaginata in a clade with subsection Biobatae species and some Patellares species, while other Patellares species formed a distinct clade, contrasting with previous nuclear ITS results. These findings highlight the phylogenetic complexity within Viola.
期刊介绍：
This open access journal publishes high-quality and concise research articles reporting the sequence of full mitochondrial genomes, and short communications focusing on the physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism and interactions.
京公网安备 11010802042870号
京ICP备2023020795号-1
分享
求助内容：
应助结果提醒方式：
扫码关注我们
