柑橘（Citrus hystrix DC）质体全基因组。1813（芸香科）及其系统发育分析。

IF 0.5 4区生物学 Q4 GENETICS & HEREDITY Mitochondrial DNA. Part B, Resources Pub Date : 2025-01-07 eCollection Date: 2025-01-01 DOI:10.1080/23802359.2025.2449723

Wan Shuan Lee, Warut Donrung, Bui Manh Hung, Nurien Hidayu Muhamad Rusly, Shiou Yih Lee, Tawatchai Tanee

{"title":"柑橘（Citrus hystrix DC）质体全基因组。1813（芸香科）及其系统发育分析。","authors":"Wan Shuan Lee, Warut Donrung, Bui Manh Hung, Nurien Hidayu Muhamad Rusly, Shiou Yih Lee, Tawatchai Tanee","doi":"10.1080/23802359.2025.2449723","DOIUrl":null,"url":null,"abstract":"The complete plastome size of Citrus hystrix DC. 1813 was 159,893 bp in length and has a typical quadripartite structure. The 87,148-bp-long large single-copy and the 18,763-bp-long small single-copy regions were separated by a pair of inverted repeats (each 26,991 bp). The plastome was predicted to contain 132 genes, of which 87 were CDS, 37 were tRNA, and eight were rRNA genes. The plastome was A/T biassed, and the overall GC content was 38.4%. Using maximum likelihood and Bayesian inference methods, the phylogenetic analysis of the complete plastome sequence revealed a close relationship between C. hystrix and C. aurantiifolia, placing them under the same clade as C. micrantha.","PeriodicalId":18647,"journal":{"name":"Mitochondrial DNA. Part B, Resources","volume":"10 1","pages":"94-98"},"PeriodicalIF":0.5000,"publicationDate":"2025-01-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11721868/pdf/","citationCount":"0","resultStr":"{\"title\":\"The complete plastid genome of Citrus hystrix DC. 1813 (Rutaceae) and its phylogenetic analysis.\",\"authors\":\"Wan Shuan Lee, Warut Donrung, Bui Manh Hung, Nurien Hidayu Muhamad Rusly, Shiou Yih Lee, Tawatchai Tanee\",\"doi\":\"10.1080/23802359.2025.2449723\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The complete plastome size of Citrus hystrix DC. 1813 was 159,893 bp in length and has a typical quadripartite structure. The 87,148-bp-long large single-copy and the 18,763-bp-long small single-copy regions were separated by a pair of inverted repeats (each 26,991 bp). The plastome was predicted to contain 132 genes, of which 87 were CDS, 37 were tRNA, and eight were rRNA genes. The plastome was A/T biassed, and the overall GC content was 38.4%. Using maximum likelihood and Bayesian inference methods, the phylogenetic analysis of the complete plastome sequence revealed a close relationship between C. hystrix and C. aurantiifolia, placing them under the same clade as C. micrantha.\",\"PeriodicalId\":18647,\"journal\":{\"name\":\"Mitochondrial DNA. Part B, Resources\",\"volume\":\"10 1\",\"pages\":\"94-98\"},\"PeriodicalIF\":0.5000,\"publicationDate\":\"2025-01-07\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11721868/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Mitochondrial DNA. Part B, Resources\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1080/23802359.2025.2449723\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q4\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Mitochondrial DNA. Part B, Resources","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1080/23802359.2025.2449723","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/1 0:00:00","PubModel":"eCollection","JCR":"Q4","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}

引用次数: 0

摘要

柑橘（Citrus hystrix DC）的全质体大小。1813全长159,893 bp，具有典型的四部结构。87,148 bp的大单拷贝区和18,763 bp的小单拷贝区被一对反向重复序列（每个26,991 bp）分开。预测质体包含132个基因，其中CDS基因87个，tRNA基因37个，rRNA基因8个。质体呈A/T偏置，总GC含量为38.4%。利用最大似然和贝叶斯推理方法，对全质体组序列进行系统发育分析，揭示了金莲与黄萼菊的亲缘关系，并将它们与薇甘菊归为同一枝。

本文章由计算机程序翻译，如有差异，请以英文原文为准。

查看原文

微信好友朋友圈 QQ好友复制链接

本刊更多论文

The complete plastid genome of Citrus hystrix DC. 1813 (Rutaceae) and its phylogenetic analysis.

The complete plastome size of Citrus hystrix DC. 1813 was 159,893 bp in length and has a typical quadripartite structure. The 87,148-bp-long large single-copy and the 18,763-bp-long small single-copy regions were separated by a pair of inverted repeats (each 26,991 bp). The plastome was predicted to contain 132 genes, of which 87 were CDS, 37 were tRNA, and eight were rRNA genes. The plastome was A/T biassed, and the overall GC content was 38.4%. Using maximum likelihood and Bayesian inference methods, the phylogenetic analysis of the complete plastome sequence revealed a close relationship between C. hystrix and C. aurantiifolia, placing them under the same clade as C. micrantha.

求助全文

通过发布文献求助，成功后即可免费获取论文全文。去求助

来源期刊

Mitochondrial DNA. Part B, Resources Biochemistry, Genetics and Molecular Biology-Molecular Biology

CiteScore

1.30

自引率

20.00%

发文量

670

期刊介绍： This open access journal publishes high-quality and concise research articles reporting the sequence of full mitochondrial genomes, and short communications focusing on the physical, chemical, and biochemical aspects of mtDNA and proteins involved in mtDNA metabolism and interactions.