药理学和转录组学综合分析预测白藜芦醇将通过靶向Ccl2和Esr1改善微塑料诱导的肺损伤。

IF 3.9 3区 环境科学与生态学 Q2 ENVIRONMENTAL SCIENCES Toxics Pub Date : 2024-12-14 DOI:10.3390/toxics12120910
Yadong Zhang, Jingyi Ren, Siqi Zhu, Zihao Guo, Huanting Pei, Xiaoya Sun, Jiarui Wu, Weijie Yang, Jinshi Zuo, Yuxia Ma
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引用次数: 0

摘要

背景:微塑料在地球上无处不在,对人类健康构成越来越大的威胁。先前的研究表明,肺是多磺酸粘多糖暴露的主要器官。白藜芦醇(RES)是一种常见的膳食多酚,具有抗炎和抗氧化作用。然而,RES是否对mps诱导的肺损伤具有保护作用尚不清楚。方法:从5个数据库中检索RES指标。通过综合生物信息学分析鉴定差异表达基因(DEGs)。采用多种算法筛选核心目标。最后,利用分子对接分析和分子动力学(MD)模拟验证了RES与核心靶点之间的结合亲和力。结果:在转录组中共鉴定出1235个deg。去除重复序列后,从5个数据库中共获得739个RES靶点,其中66个靶点与deg相交。通过拓扑分析和机器学习进一步确定潜在的核心靶点(Esr1, Ccl2)。这些发现随后被分子对接和MD模拟验证。结论:本研究表明RES可通过靶向Esr1和Ccl2减轻MPs所致的肺损伤。我们的研究为mps诱导的肺损伤的预防和治疗提供了新的视角。
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Integrative Analysis of Pharmacology and Transcriptomics Predicts Resveratrol Will Ameliorate Microplastics-Induced Lung Damage by Targeting Ccl2 and Esr1.

Background: Microplastics (MPs) are ubiquitous on earth, posing a growing threat to human health. Previous studies have shown that the lung is a primary organ for MPs exposure. Resveratrol (RES) is a common dietary polyphenol that exhibits anti-inflammatory and antioxidant effects. However, whether RES exerts a protective effect against MPs-induced lung damage is still unknown.

Methods: The targets of RES were retrieved from five databases. Differentially expressed genes (DEGs) were identified through comprehensive bioinformatic analysis. Multiple algorithms were employed to screen for the core targets. Ultimately, molecular docking analysis and molecular dynamics (MD) simulations were utilized to confirm the binding affinity between RES and the core targets.

Results: In total, 1235 DEGs were identified in the transcriptomes. After removing duplicates, a total of 739 RES targets were obtained from five databases, and 66 of these targets intersected with DEGs. The potential core targets (Esr1, Ccl2) were further identified through topological analysis and machine learning. These findings were subsequently verified by molecular docking and MD simulations.

Conclusions: This study demonstrated that RES may mitigate lung injury induced by MPs by targeting Esr1 and Ccl2. Our research offers a novel perspective on the prevention and treatment of MPs-induced lung injury.

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来源期刊
Toxics
Toxics Chemical Engineering-Chemical Health and Safety
CiteScore
4.50
自引率
10.90%
发文量
681
审稿时长
6 weeks
期刊介绍: Toxics (ISSN 2305-6304) is an international, peer-reviewed, open access journal which provides an advanced forum for studies related to all aspects of toxic chemicals and materials. It publishes reviews, regular research papers, and short communications. Our aim is to encourage scientists to publish their experimental and theoretical results in detail. There is, therefore, no restriction on the maximum length of the papers, although authors should write their papers in a clear and concise way. The full experimental details must be provided so that the results can be reproduced. Electronic files or software regarding the full details of calculations and experimental procedure can be deposited as supplementary material, if it is not possible to publish them along with the text.
期刊最新文献
RETRACTED: Di Paola et al. Environmental Risk Assessment of Dexamethasone Sodium Phosphate and Tocilizumab Mixture in Zebrafish Early Life Stage (Danio rerio). Toxics 2022, 10, 279. RETRACTED: Paola et al. Environmental Impact of Pharmaceutical Pollutants: Synergistic Toxicity of Ivermectin and Cypermethrin. Toxics 2022, 10, 388. RETRACTED: Di Paola et al. Combined Effects of Potassium Perchlorate and a Neonicotinoid on Zebrafish Larvae (Danio rerio). Toxics 2022, 10, 203. Human Activity as a Growing Threat to Marine Ecosystems: Plastic and Temperature Effects on the Sponge Sarcotragus spinosulus. Subchronic Exposure to Low-Dose Chlorfenapyr and Emamectin Benzoate Disrupts Kidney Metabolism in Rats.
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