一种新的预测胃癌预后的DNA损伤相关基因指标。

IF 2.6 4区 生物学 Q3 BIOTECHNOLOGY & APPLIED MICROBIOLOGY 3 Biotech Pub Date : 2025-01-01 Epub Date: 2025-01-04 DOI:10.1007/s13205-024-04166-5
Haipeng Xiao, Qianjin He, Yang Hu, Chang Li, Han Tian, Feng Chen, Wenchong Song
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引用次数: 0

摘要

胃癌是癌症死亡率较高的主要癌症之一,具有显著的异质性。发展精确的预后模型对于推进治疗策略至关重要。认识到DNA损伤在肿瘤进展中的关键作用,我们对DNA损伤相关基因进行了共识聚类分析,将TCGA临床队列中的胃癌患者分为不同的亚型。然后利用机器学习算法根据差异表达基因的Cox回归构建预后模型。使用GSE胃癌队列进行验证。此外,我们还通过基因定位和药物敏感性分析调查了患者的其他特征性反应。本研究使用鉴定出的两种DNA损伤亚型之间的12个差异预后标志基因来计算患者的风险评分。该评分可预测胃癌患者的预后及总生存时间。较高的风险评分意味着较低的药物敏感性,较低的生存率,并可能对免疫治疗的反应较差。我们的发现为未来针对DNA损伤及其免疫微环境的研究提供了基础,以改善预后和对免疫治疗的反应。
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A novel DNA damage-related gene index for predicting prognosis in gastric cancer.

Gastric cancer is one of the major cancers with high cancer mortality and shows significant heterogeneity. The development of precise prognostic models is crucial for advancing treatment strategies. Recognizing the pivotal role of DNA damage in tumor progression, we conducted a consensus clustering analysis of DNA damage-related genes to categorize gastric cancer patients from the TCGA clinical cohort into distinct subtypes. Prognostic models were then constructed utilizing machine learning algorithms following Cox regression with differentially expressed genes. Validation was performed using the GSE gastric cancer cohort. Additionally, we investigated other characteristic responses of patients through gene mapping and drug sensitivity analysis. This study 12 differentially prognostic signature genes between the 2 DNA damage subtypes identified were used to calculate risk scores for the patients. This score predicts the prognosis of patients with gastric cancer and their overall survival time. Higher risk scores mean less drug sensitivity, lower survival, and possibly a poorer response to immunotherapy. Our findings provide the basis for future studies targeting DNA damage and its immune microenvironment to improve prognosis and response to immunotherapy.

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来源期刊
3 Biotech
3 Biotech Agricultural and Biological Sciences-Agricultural and Biological Sciences (miscellaneous)
CiteScore
6.00
自引率
0.00%
发文量
314
期刊介绍: 3 Biotech publishes the results of the latest research related to the study and application of biotechnology to: - Medicine and Biomedical Sciences - Agriculture - The Environment The focus on these three technology sectors recognizes that complete Biotechnology applications often require a combination of techniques. 3 Biotech not only presents the latest developments in biotechnology but also addresses the problems and benefits of integrating a variety of techniques for a particular application. 3 Biotech will appeal to scientists and engineers in both academia and industry focused on the safe and efficient application of Biotechnology to Medicine, Agriculture and the Environment.
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