氟中毒靶向药物中氟中毒免疫特性及铜血症相关基因的综合分析。

IF 3.4 3区 生物学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Biological Trace Element Research Pub Date : 2025-01-21 DOI:10.1007/s12011-025-04517-0
Ruijie Ba, Bin Liu, Zichen Feng, Guoqing Wang, Shu Niu, Yan Wang, Xuecheng Jiao, Cuiping Wu, Fangfang Yu, Guoyu Zhou, Yue Ba
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引用次数: 0

摘要

本研究旨在探讨铜虫病在氟中毒中的作用,并寻找治疗氟中毒的潜在靶向药物。使用inSilicoMerging软件包合并GSE70719和GSE195920数据集。使用R软件发现暴露组和对照组之间的差异。通过维恩图获得DEG和cuprotosiss相关基因(CRGs)的重叠基因,并通过GO和KEGG进行富集。Hub基因通过PPI网络鉴定,并通过GSEA富集。ROC曲线、xCell算法和一致聚类分析分别用于评估诊断效果、检查免疫细胞浸润和鉴定铜增生亚型。使用GSE53937数据集进行外部验证。采用DSigDB数据库预测小分子药物。通过分子对接验证小分子药物与枢纽基因之间的关系。共获得1522个deg(743个上调基因,779个下调基因)和33个deg与crg重叠基因。33个重叠基因在核糖体生物发生和氧化磷酸化途径中富集。中心基因DNTTIP2、GTPBP4、IMP4、MRPL12、MRPL13、MRPL2、MRPS2、MRPS22、NOP2、RSL1D1、SURF6被鉴定出来,AUC为0.8,具有较强的诊断能力。这些中心基因与免疫反应和炎症有关。根据33个CRGs建立了两种铜凸型。Mepacrine作为一种潜在的药物被筛选,并证明了与IMP4对接的稳定性。总之,目前的研究确定了几种可能作为诊断氟中毒的潜在生物标志物的crg,并参与氟化物诱导的免疫反应。此外,通过靶向CRGs筛选了甲哌辛作为氟中毒的潜在治疗方法。
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Comprehensive Analysis of Immune Characteristics of Fluorosis and Cuprotosis-Related Genes in Fluorosis Targeted Drugs.

This study aims to investigate the role of cuprotosis in fluorosis and identify potential targeted drugs for its treatment. The GSE70719 and GSE195920 datasets were merged using the inSilicoMerging package. DEGs between the exposure and control groups were found using R software. Overlapping genes of DEG and cuprotosis-related genes (CRGs) were obtained by Venn diagram and were enriched by GO and KEGG. Hub genes were identified using PPI networks and enriched by GSEA. ROC curves, the xCell algorithm, and consensus cluster analysis were utilized to evaluate diagnostic efficacy, examine immune cell infiltration, and identify cuproptosis subtypes, respectively. The GSE53937 dataset was used for external validation. The DSigDB database was used to predict small molecule drugs. Molecular docking was used to validate the relationship between small molecule drugs and hub genes. A total of 1522 DEGs (743 upregulated genes and 779 downregulated genes) and 33 overlapping genes of DEGs and CRGs were obtained. The 33 overlapping genes were enriched in ribosomal biogenesis and oxidative phosphorylation pathways. The hub genes DNTTIP2, GTPBP4, IMP4, MRPL12, MRPL13, MRPL2, MRPS2, MRPS22, NOP2, RSL1D1, and SURF6 were identified, demonstrating great diagnostic ability with AUC > 0.8. These hub genes were associated with immune response and inflammation. Two cuproptosis patterns were established based on 33 CRGs. Mepacrine was screened as a potential drug and demonstrated stability in docking with IMP4. In summary, the current study identified several CRGs that may serve as potential biomarkers for diagnosing fluorosis and are involved in fluoride-induced immune responses. Additionally, mepacrine was screened as a potential treatment for fluorosis by targeting CRGs.

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来源期刊
Biological Trace Element Research
Biological Trace Element Research 生物-内分泌学与代谢
CiteScore
8.70
自引率
10.30%
发文量
459
审稿时长
2 months
期刊介绍: Biological Trace Element Research provides a much-needed central forum for the emergent, interdisciplinary field of research on the biological, environmental, and biomedical roles of trace elements. Rather than confine itself to biochemistry, the journal emphasizes the integrative aspects of trace metal research in all appropriate fields, publishing human and animal nutritional studies devoted to the fundamental chemistry and biochemistry at issue as well as to the elucidation of the relevant aspects of preventive medicine, epidemiology, clinical chemistry, agriculture, endocrinology, animal science, pharmacology, microbiology, toxicology, virology, marine biology, sensory physiology, developmental biology, and related fields.
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