Maya Fichmann Levital, Samah Khawaled, John A Kennedy, Moti Freiman
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We propose NPB-LDPET, a DL-based non-parametric Bayesian framework for LD PET reconstruction and uncertainty assessment. Our framework utilizes an Adam optimizer with stochastic gradient Langevin dynamics (SGLD) to sample from the underlying posterior distribution. We employed the Ultra-low-dose PET Challenge dataset to assess our framework's performance relative to the Monte Carlo dropout benchmark. We evaluated global reconstruction accuracy utilizing SSIM, PSNR, and NRMSE, local lesion conspicuity using mean absolute error (MAE) and local contrast, and the clinical relevance of uncertainty maps employing correlation between the uncertainty measures and the dose reduction factor (DRF). Our NPB-LDPET reconstruction method exhibits a significantly superior global reconstruction accuracy for various DRFs (paired t-test, <math><mrow><mi>p</mi> <mo><</mo> <mn>0.0001</mn></mrow> </math> , N=10, 631). Moreover, we demonstrate a 21% reduction in MAE (573.54 vs. 723.70, paired t-test, <math><mrow><mi>p</mi> <mo><</mo> <mn>0.0001</mn></mrow> </math> , N=28) and an 8.3% improvement in local lesion contrast (2.077 vs. 1.916, paired t-test, <math><mrow><mi>p</mi> <mo><</mo> <mn>0.0001</mn></mrow> </math> , N=28). Furthermore, our framework exhibits a stronger correlation between the predicted uncertainty 95th percentile score and the DRF ( <math> <mrow><msup><mi>r</mi> <mn>2</mn></msup> <mo>=</mo> <mn>0.9174</mn></mrow> </math> vs. <math> <mrow><msup><mi>r</mi> <mn>2</mn></msup> <mo>=</mo> <mn>0.6144</mn></mrow> </math> , N=10, 631). The proposed framework has the potential to improve clinical decision-making for LD PET imaging by providing a more accurate and informative reconstruction while reducing radiation exposure.</p>","PeriodicalId":49840,"journal":{"name":"Medical & Biological Engineering & Computing","volume":" ","pages":"1715-1730"},"PeriodicalIF":2.6000,"publicationDate":"2025-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12106558/pdf/","citationCount":"0","resultStr":"{\"title\":\"Non-parametric Bayesian deep learning approach for whole-body low-dose PET reconstruction and uncertainty assessment.\",\"authors\":\"Maya Fichmann Levital, Samah Khawaled, John A Kennedy, Moti Freiman\",\"doi\":\"10.1007/s11517-025-03296-z\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Positron emission tomography (PET) imaging plays a pivotal role in oncology for the early detection of metastatic tumors and response to therapy assessment due to its high sensitivity compared to anatomical imaging modalities. The balance between image quality and radiation exposure is critical, as reducing the administered dose results in a lower signal-to-noise ratio (SNR) and information loss, which may significantly affect clinical diagnosis. Deep learning (DL) algorithms have recently made significant progress in low-dose (LD) PET reconstruction. Nevertheless, a successful clinical application requires a thorough evaluation of uncertainty to ensure informed clinical judgment. We propose NPB-LDPET, a DL-based non-parametric Bayesian framework for LD PET reconstruction and uncertainty assessment. Our framework utilizes an Adam optimizer with stochastic gradient Langevin dynamics (SGLD) to sample from the underlying posterior distribution. We employed the Ultra-low-dose PET Challenge dataset to assess our framework's performance relative to the Monte Carlo dropout benchmark. We evaluated global reconstruction accuracy utilizing SSIM, PSNR, and NRMSE, local lesion conspicuity using mean absolute error (MAE) and local contrast, and the clinical relevance of uncertainty maps employing correlation between the uncertainty measures and the dose reduction factor (DRF). Our NPB-LDPET reconstruction method exhibits a significantly superior global reconstruction accuracy for various DRFs (paired t-test, <math><mrow><mi>p</mi> <mo><</mo> <mn>0.0001</mn></mrow> </math> , N=10, 631). Moreover, we demonstrate a 21% reduction in MAE (573.54 vs. 723.70, paired t-test, <math><mrow><mi>p</mi> <mo><</mo> <mn>0.0001</mn></mrow> </math> , N=28) and an 8.3% improvement in local lesion contrast (2.077 vs. 1.916, paired t-test, <math><mrow><mi>p</mi> <mo><</mo> <mn>0.0001</mn></mrow> </math> , N=28). Furthermore, our framework exhibits a stronger correlation between the predicted uncertainty 95th percentile score and the DRF ( <math> <mrow><msup><mi>r</mi> <mn>2</mn></msup> <mo>=</mo> <mn>0.9174</mn></mrow> </math> vs. <math> <mrow><msup><mi>r</mi> <mn>2</mn></msup> <mo>=</mo> <mn>0.6144</mn></mrow> </math> , N=10, 631). 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引用次数: 0
摘要
与解剖成像方式相比,正电子发射断层扫描(PET)成像具有较高的灵敏度,在肿瘤转移的早期检测和治疗反应评估中发挥着关键作用。图像质量和辐射暴露之间的平衡至关重要,因为减少给药剂量会导致较低的信噪比(SNR)和信息损失,这可能会显著影响临床诊断。近年来,深度学习(DL)算法在低剂量PET重建方面取得了重大进展。然而,成功的临床应用需要对不确定性进行彻底的评估,以确保知情的临床判断。我们提出了一种基于dl的非参数贝叶斯框架NPB-LDPET,用于LDPET重建和不确定性评估。我们的框架利用随机梯度朗格万动力学(SGLD)的亚当优化器从潜在的后验分布中采样。我们使用超低剂量PET挑战数据集来评估我们的框架相对于蒙特卡洛辍学基准的性能。我们利用SSIM、PSNR和NRMSE评估了全局重建的准确性,利用平均绝对误差(MAE)和局部对比评估了局部病变的显著性,利用不确定性测量和剂量减少因子(DRF)之间的相关性评估了不确定性图的临床相关性。我们的NPB-LDPET重建方法在各种DRFs中显示出显著优越的全局重建精度(配对t检验,p 0.0001, N= 10,631)。此外,我们发现MAE降低了21%(573.54比723.70,配对t检验,p 0.0001, N=28),局部病变对比改善了8.3%(2.077比1.916,配对t检验,p 0.0001, N=28)。此外,我们的框架显示,预测的不确定性第95百分位得分与DRF之间存在更强的相关性(r2 = 0.9174 vs r 2 = 0.6144, N= 10,631)。通过提供更准确和信息丰富的重建,同时减少辐射暴露,所提出的框架有可能改善LD PET成像的临床决策。
Non-parametric Bayesian deep learning approach for whole-body low-dose PET reconstruction and uncertainty assessment.
Positron emission tomography (PET) imaging plays a pivotal role in oncology for the early detection of metastatic tumors and response to therapy assessment due to its high sensitivity compared to anatomical imaging modalities. The balance between image quality and radiation exposure is critical, as reducing the administered dose results in a lower signal-to-noise ratio (SNR) and information loss, which may significantly affect clinical diagnosis. Deep learning (DL) algorithms have recently made significant progress in low-dose (LD) PET reconstruction. Nevertheless, a successful clinical application requires a thorough evaluation of uncertainty to ensure informed clinical judgment. We propose NPB-LDPET, a DL-based non-parametric Bayesian framework for LD PET reconstruction and uncertainty assessment. Our framework utilizes an Adam optimizer with stochastic gradient Langevin dynamics (SGLD) to sample from the underlying posterior distribution. We employed the Ultra-low-dose PET Challenge dataset to assess our framework's performance relative to the Monte Carlo dropout benchmark. We evaluated global reconstruction accuracy utilizing SSIM, PSNR, and NRMSE, local lesion conspicuity using mean absolute error (MAE) and local contrast, and the clinical relevance of uncertainty maps employing correlation between the uncertainty measures and the dose reduction factor (DRF). Our NPB-LDPET reconstruction method exhibits a significantly superior global reconstruction accuracy for various DRFs (paired t-test, , N=10, 631). Moreover, we demonstrate a 21% reduction in MAE (573.54 vs. 723.70, paired t-test, , N=28) and an 8.3% improvement in local lesion contrast (2.077 vs. 1.916, paired t-test, , N=28). Furthermore, our framework exhibits a stronger correlation between the predicted uncertainty 95th percentile score and the DRF ( vs. , N=10, 631). The proposed framework has the potential to improve clinical decision-making for LD PET imaging by providing a more accurate and informative reconstruction while reducing radiation exposure.
期刊介绍:
Founded in 1963, Medical & Biological Engineering & Computing (MBEC) continues to serve the biomedical engineering community, covering the entire spectrum of biomedical and clinical engineering. The journal presents exciting and vital experimental and theoretical developments in biomedical science and technology, and reports on advances in computer-based methodologies in these multidisciplinary subjects. The journal also incorporates new and evolving technologies including cellular engineering and molecular imaging.
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