Pub Date : 2024-12-01Epub Date: 2024-07-22DOI: 10.1007/s11517-024-03155-3
Tânia Nunes, Luís Gaspar, José N Faria, David Portugal, Telmo Lopes, Pedro Fernandes, Mahmoud Tavakoli
Conventional patient monitoring in healthcare has limitations such as delayed identification of deteriorating conditions, disruptions to patient routines, and discomfort due to extensive wiring for bed-bound patients. To address these, we have recently developed an innovative IoT-based healthcare system for real-time wireless patient monitoring. This system includes a flexible epidermal patch that collects vital signs using low power electronics and transmits the data to IoT nodes in hospital beds. The nodes connect to a smart gateway that aggregates the information and interfaces with the hospital information system (HIS), facilitating the exchange of electronic health records (EHR) and enhancing access to patient vital signs for healthcare professionals. Our study validates the proposed smart bed architecture in a clinical setting, assessing its ability to meet healthcare personnel needs, patient comfort, and data transmission reliability. Technical performance assessment involves analyzing key performance indicators for communication across various interfaces, including the wearable device and the smart box, and the link between the gateway and the HIS. Also, a comparative analysis is conducted on data from our architecture and traditional hospital equipment. Usability evaluation involves questionnaires completed by patients and healthcare professionals. Results demonstrate the robustness of the architecture proposed, exhibiting reliable and efficient information flow, while offering significant improvements in patient monitoring over conventional wired methods, including unrestricted mobility and improved comfort to enhance healthcare delivery.
传统的医疗保健病人监测存在一些局限性,如病情恶化的识别延迟、病人的日常工作被打乱、卧床病人因大量布线而感到不适等。为了解决这些问题,我们最近开发了一种基于物联网的创新型医疗保健系统,用于对病人进行实时无线监控。该系统包括一个灵活的表皮贴片,利用低功耗电子设备收集生命体征,并将数据传输到病床上的物联网节点。节点连接到智能网关,网关汇总信息并与医院信息系统(HIS)连接,从而促进电子健康记录(EHR)的交换,并提高医护人员对患者生命体征的访问速度。我们的研究在临床环境中验证了建议的智能床架构,评估了其满足医护人员需求、病人舒适度和数据传输可靠性的能力。技术性能评估包括分析各种接口(包括可穿戴设备和智能盒,以及网关和 HIS 之间的链接)通信的关键性能指标。此外,还对我们的架构和传统医院设备的数据进行了对比分析。可用性评估包括由患者和医护人员填写的调查问卷。结果表明,所提出的架构非常稳健,信息流可靠高效,与传统的有线方法相比,病人监控功能有了显著改善,包括移动不受限制和提高舒适度,从而加强了医疗服务。
{"title":"Deployment and validation of a smart bed architecture for untethered patients with wireless biomonitoring stickers.","authors":"Tânia Nunes, Luís Gaspar, José N Faria, David Portugal, Telmo Lopes, Pedro Fernandes, Mahmoud Tavakoli","doi":"10.1007/s11517-024-03155-3","DOIUrl":"10.1007/s11517-024-03155-3","url":null,"abstract":"<p><p>Conventional patient monitoring in healthcare has limitations such as delayed identification of deteriorating conditions, disruptions to patient routines, and discomfort due to extensive wiring for bed-bound patients. To address these, we have recently developed an innovative IoT-based healthcare system for real-time wireless patient monitoring. This system includes a flexible epidermal patch that collects vital signs using low power electronics and transmits the data to IoT nodes in hospital beds. The nodes connect to a smart gateway that aggregates the information and interfaces with the hospital information system (HIS), facilitating the exchange of electronic health records (EHR) and enhancing access to patient vital signs for healthcare professionals. Our study validates the proposed smart bed architecture in a clinical setting, assessing its ability to meet healthcare personnel needs, patient comfort, and data transmission reliability. Technical performance assessment involves analyzing key performance indicators for communication across various interfaces, including the wearable device and the smart box, and the link between the gateway and the HIS. Also, a comparative analysis is conducted on data from our architecture and traditional hospital equipment. Usability evaluation involves questionnaires completed by patients and healthcare professionals. Results demonstrate the robustness of the architecture proposed, exhibiting reliable and efficient information flow, while offering significant improvements in patient monitoring over conventional wired methods, including unrestricted mobility and improved comfort to enhance healthcare delivery.</p>","PeriodicalId":49840,"journal":{"name":"Medical & Biological Engineering & Computing","volume":" ","pages":"3815-3840"},"PeriodicalIF":4.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141735514","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-01Epub Date: 2024-07-20DOI: 10.1007/s11517-024-03165-1
Matin Khalili, Hamid GholamHosseini, Andrew Lowe, Matthew M Y Kuo
Current research focuses on improving electrocardiogram (ECG) monitoring systems to enable real-time and long-term usage, with a specific focus on facilitating remote monitoring of ECG data. This advancement is crucial for improving cardiovascular health by facilitating early detection and management of cardiovascular disease (CVD). To efficiently meet these demands, user-friendly and comfortable ECG sensors that surpass wet electrodes are essential. This has led to increased interest in ECG capacitive electrodes, which facilitate signal detection without requiring gel preparation or direct conductive contact with the body. This feature makes them suitable for wearables or integrated measurement devices. However, ongoing research is essential as the signals they measure often lack sufficient clinical accuracy due to susceptibility to interferences, particularly Motion Artifacts (MAs). While our primary focus is on studying MAs, we also address other limitations crucial for designing a high Signal-to-Noise Ratio (SNR) circuit and effectively mitigating MAs. The literature on the origins and models of MAs in capacitive electrodes is insufficient, which we aim to address alongside discussing mitigation methods. We bring attention to digital signal processing approaches, especially those using reference signals like Electrode-Tissue Impedance (ETI), as highly promising. Finally, we discuss its challenges, proposed solutions, and offer insights into future research directions.
目前的研究重点是改进心电图(ECG)监测系统,以实现实时和长期使用,特别是促进心电图数据的远程监测。这一进步对于通过促进心血管疾病(CVD)的早期检测和管理来改善心血管健康至关重要。为了有效地满足这些需求,超越湿电极的用户友好型和舒适型心电图传感器至关重要。因此,人们对心电图电容电极的兴趣与日俱增,因为这种电极无需制备凝胶或与人体直接导电接触,即可进行信号检测。这一特点使其适用于可穿戴设备或集成测量设备。然而,由于易受干扰,特别是运动伪差(MAs)的影响,它们测量的信号往往缺乏足够的临床准确性,因此持续的研究至关重要。虽然我们的主要重点是研究运动伪影,但我们也探讨了对设计高信噪比(SNR)电路和有效缓解运动伪影至关重要的其他限制因素。有关电容电极中 MA 的起源和模型的文献不足,我们在讨论缓解方法的同时,也致力于解决这一问题。我们将关注数字信号处理方法,尤其是使用电极-组织阻抗 (ETI) 等参考信号的方法,因为这些方法前景广阔。最后,我们讨论了其面临的挑战、建议的解决方案,并对未来的研究方向提出了见解。
{"title":"Motion artifacts in capacitive ECG monitoring systems: a review of existing models and reduction techniques.","authors":"Matin Khalili, Hamid GholamHosseini, Andrew Lowe, Matthew M Y Kuo","doi":"10.1007/s11517-024-03165-1","DOIUrl":"10.1007/s11517-024-03165-1","url":null,"abstract":"<p><p>Current research focuses on improving electrocardiogram (ECG) monitoring systems to enable real-time and long-term usage, with a specific focus on facilitating remote monitoring of ECG data. This advancement is crucial for improving cardiovascular health by facilitating early detection and management of cardiovascular disease (CVD). To efficiently meet these demands, user-friendly and comfortable ECG sensors that surpass wet electrodes are essential. This has led to increased interest in ECG capacitive electrodes, which facilitate signal detection without requiring gel preparation or direct conductive contact with the body. This feature makes them suitable for wearables or integrated measurement devices. However, ongoing research is essential as the signals they measure often lack sufficient clinical accuracy due to susceptibility to interferences, particularly Motion Artifacts (MAs). While our primary focus is on studying MAs, we also address other limitations crucial for designing a high Signal-to-Noise Ratio (SNR) circuit and effectively mitigating MAs. The literature on the origins and models of MAs in capacitive electrodes is insufficient, which we aim to address alongside discussing mitigation methods. We bring attention to digital signal processing approaches, especially those using reference signals like Electrode-Tissue Impedance (ETI), as highly promising. Finally, we discuss its challenges, proposed solutions, and offer insights into future research directions.</p>","PeriodicalId":49840,"journal":{"name":"Medical & Biological Engineering & Computing","volume":" ","pages":"3599-3622"},"PeriodicalIF":2.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11568998/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141731576","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-01Epub Date: 2024-07-24DOI: 10.1007/s11517-024-03171-3
Yinghu Peng, Wei Wang, Lin Wang, Hao Zhou, Zhenxian Chen, Qida Zhang, Guanglin Li
The estimation of joint contact forces in musculoskeletal multibody dynamics models typically requires the use of expensive and time-consuming technologies, such as reflective marker-based motion capture (Mocap) system. In this study, we aim to propose a more accessible and cost-effective solution that utilizes the dual smartphone videos (SPV)-driven musculoskeletal multibody dynamics modeling workflow to estimate the lower limb mechanics. Twelve participants were recruited to collect marker trajectory data, force plate data, and motion videos during walking and running. The smartphone videos were initially analyzed using the OpenCap platform to identify key joint points and anatomical markers. The markers were used as inputs for the musculoskeletal multibody dynamics model to calculate the lower limb joint kinematics, joint contact forces, and ground reaction forces, which were then evaluated by the Mocap-based workflow. The root mean square error (RMSE), mean absolute deviation (MAD), and Pearson correlation coefficient (ρ) were adopted to evaluate the results. Excellent or strong Pearson correlations were observed in most lower limb joint angles (ρ = 0.74 ~ 0.94). The averaged MADs and RMSEs for the joint angles were 1.93 ~ 6.56° and 2.14 ~ 7.08°, respectively. Excellent or strong Pearson correlations were observed in most lower limb joint contact forces and ground reaction forces (ρ = 0.78 ~ 0.92). The averaged MADs and RMSEs for the joint lower limb joint contact forces were 0.18 ~ 1.07 bodyweight (BW) and 0.28 ~ 1.32 BW, respectively. Overall, the proposed smartphone video-driven musculoskeletal multibody dynamics simulation workflow demonstrated reliable accuracy in predicting lower limb mechanics and ground reaction forces, which has the potential to expedite gait dynamics analysis in a clinical setting.
{"title":"Smartphone videos-driven musculoskeletal multibody dynamics modelling workflow to estimate the lower limb joint contact forces and ground reaction forces.","authors":"Yinghu Peng, Wei Wang, Lin Wang, Hao Zhou, Zhenxian Chen, Qida Zhang, Guanglin Li","doi":"10.1007/s11517-024-03171-3","DOIUrl":"10.1007/s11517-024-03171-3","url":null,"abstract":"<p><p>The estimation of joint contact forces in musculoskeletal multibody dynamics models typically requires the use of expensive and time-consuming technologies, such as reflective marker-based motion capture (Mocap) system. In this study, we aim to propose a more accessible and cost-effective solution that utilizes the dual smartphone videos (SPV)-driven musculoskeletal multibody dynamics modeling workflow to estimate the lower limb mechanics. Twelve participants were recruited to collect marker trajectory data, force plate data, and motion videos during walking and running. The smartphone videos were initially analyzed using the OpenCap platform to identify key joint points and anatomical markers. The markers were used as inputs for the musculoskeletal multibody dynamics model to calculate the lower limb joint kinematics, joint contact forces, and ground reaction forces, which were then evaluated by the Mocap-based workflow. The root mean square error (RMSE), mean absolute deviation (MAD), and Pearson correlation coefficient (ρ) were adopted to evaluate the results. Excellent or strong Pearson correlations were observed in most lower limb joint angles (ρ = 0.74 ~ 0.94). The averaged MADs and RMSEs for the joint angles were 1.93 ~ 6.56° and 2.14 ~ 7.08°, respectively. Excellent or strong Pearson correlations were observed in most lower limb joint contact forces and ground reaction forces (ρ = 0.78 ~ 0.92). The averaged MADs and RMSEs for the joint lower limb joint contact forces were 0.18 ~ 1.07 bodyweight (BW) and 0.28 ~ 1.32 BW, respectively. Overall, the proposed smartphone video-driven musculoskeletal multibody dynamics simulation workflow demonstrated reliable accuracy in predicting lower limb mechanics and ground reaction forces, which has the potential to expedite gait dynamics analysis in a clinical setting.</p>","PeriodicalId":49840,"journal":{"name":"Medical & Biological Engineering & Computing","volume":" ","pages":"3841-3853"},"PeriodicalIF":4.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141753224","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-01Epub Date: 2024-07-06DOI: 10.1007/s11517-024-03160-6
David Rivas-Villar, Álvaro S Hervella, José Rouco, Jorge Novo
Retinal image registration is of utmost importance due to its wide applications in medical practice. In this context, we propose ConKeD, a novel deep learning approach to learn descriptors for retinal image registration. In contrast to current registration methods, our approach employs a novel multi-positive multi-negative contrastive learning strategy that enables the utilization of additional information from the available training samples. This makes it possible to learn high-quality descriptors from limited training data. To train and evaluate ConKeD, we combine these descriptors with domain-specific keypoints, particularly blood vessel bifurcations and crossovers, that are detected using a deep neural network. Our experimental results demonstrate the benefits of the novel multi-positive multi-negative strategy, as it outperforms the widely used triplet loss technique (single-positive and single-negative) as well as the single-positive multi-negative alternative. Additionally, the combination of ConKeD with the domain-specific keypoints produces comparable results to the state-of-the-art methods for retinal image registration, while offering important advantages such as avoiding pre-processing, utilizing fewer training samples, and requiring fewer detected keypoints, among others. Therefore, ConKeD shows a promising potential towards facilitating the development and application of deep learning-based methods for retinal image registration.
{"title":"ConKeD: multiview contrastive descriptor learning for keypoint-based retinal image registration.","authors":"David Rivas-Villar, Álvaro S Hervella, José Rouco, Jorge Novo","doi":"10.1007/s11517-024-03160-6","DOIUrl":"10.1007/s11517-024-03160-6","url":null,"abstract":"<p><p>Retinal image registration is of utmost importance due to its wide applications in medical practice. In this context, we propose ConKeD, a novel deep learning approach to learn descriptors for retinal image registration. In contrast to current registration methods, our approach employs a novel multi-positive multi-negative contrastive learning strategy that enables the utilization of additional information from the available training samples. This makes it possible to learn high-quality descriptors from limited training data. To train and evaluate ConKeD, we combine these descriptors with domain-specific keypoints, particularly blood vessel bifurcations and crossovers, that are detected using a deep neural network. Our experimental results demonstrate the benefits of the novel multi-positive multi-negative strategy, as it outperforms the widely used triplet loss technique (single-positive and single-negative) as well as the single-positive multi-negative alternative. Additionally, the combination of ConKeD with the domain-specific keypoints produces comparable results to the state-of-the-art methods for retinal image registration, while offering important advantages such as avoiding pre-processing, utilizing fewer training samples, and requiring fewer detected keypoints, among others. Therefore, ConKeD shows a promising potential towards facilitating the development and application of deep learning-based methods for retinal image registration.</p>","PeriodicalId":49840,"journal":{"name":"Medical & Biological Engineering & Computing","volume":" ","pages":"3721-3736"},"PeriodicalIF":2.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11568994/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141538845","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-01Epub Date: 2024-07-20DOI: 10.1007/s11517-024-03170-4
Yun Gao, Junhu Fu, Yi Guo, Yuanyuan Wang
Data-driven medical image segmentation networks require expert annotations, which are hard to obtain. Non-expert annotations are often used instead, but these can be inaccurate (referred to as "noisy labels"), misleading the network's training and causing a decline in segmentation performance. In this study, we focus on improving the segmentation performance of neural networks when trained with noisy annotations. Specifically, we propose a two-stage framework named "G-T correcting," consisting of "G" stage for recognizing noisy labels and "T" stage for correcting noisy labels. In the "G" stage, a positive feedback method is proposed to automatically recognize noisy samples, using a Gaussian mixed model to classify clean and noisy labels through the per-sample loss histogram. In the "T" stage, a confident correcting strategy and early learning strategy are adopted to allow the segmentation network to receive productive guidance from noisy labels. Experiments on simulated and real-world noisy labels show that this method can achieve over 90% accuracy in recognizing noisy labels, and improve the network's DICE coefficient to 91%. The results demonstrate that the proposed method can enhance the segmentation performance of the network when trained with noisy labels, indicating good clinical application prospects.
{"title":"G-T correcting: an improved training of image segmentation under noisy labels.","authors":"Yun Gao, Junhu Fu, Yi Guo, Yuanyuan Wang","doi":"10.1007/s11517-024-03170-4","DOIUrl":"10.1007/s11517-024-03170-4","url":null,"abstract":"<p><p>Data-driven medical image segmentation networks require expert annotations, which are hard to obtain. Non-expert annotations are often used instead, but these can be inaccurate (referred to as \"noisy labels\"), misleading the network's training and causing a decline in segmentation performance. In this study, we focus on improving the segmentation performance of neural networks when trained with noisy annotations. Specifically, we propose a two-stage framework named \"G-T correcting,\" consisting of \"G\" stage for recognizing noisy labels and \"T\" stage for correcting noisy labels. In the \"G\" stage, a positive feedback method is proposed to automatically recognize noisy samples, using a Gaussian mixed model to classify clean and noisy labels through the per-sample loss histogram. In the \"T\" stage, a confident correcting strategy and early learning strategy are adopted to allow the segmentation network to receive productive guidance from noisy labels. Experiments on simulated and real-world noisy labels show that this method can achieve over 90% accuracy in recognizing noisy labels, and improve the network's DICE coefficient to 91%. The results demonstrate that the proposed method can enhance the segmentation performance of the network when trained with noisy labels, indicating good clinical application prospects.</p>","PeriodicalId":49840,"journal":{"name":"Medical & Biological Engineering & Computing","volume":" ","pages":"3781-3799"},"PeriodicalIF":4.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141731575","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-01Epub Date: 2024-07-16DOI: 10.1007/s11517-024-03158-0
Hari Mohan Rai, Joon Yoo, Abdul Razaque
The fight against cancer, a relentless global health crisis, emphasizes the urgency for efficient and automated early detection methods. To address this critical need, this review assesses recent advances in non-invasive cancer prediction techniques, comparing conventional machine learning (CML) and deep neural networks (DNNs). Focusing on these seven major cancers, we analyze 310 publications spanning the years 2018 to 2024, focusing on detection accuracy as the key metric to identify the most effective predictive models, highlighting critical gaps in current methodologies, and suggesting directions for future research. We further delved into factors like datasets, features, and modalities to gain a comprehensive understanding of each approach's performance. Separate review tables for each cancer type and approach facilitated comparisons between top performers (accuracy exceeding 99%) and low performers (65.83 to 85.8%). Our exploration of public databases and commonly used classifiers revealed that optimal combinations of features, datasets, and models can achieve up to 100% accuracy for both CML and DNN. However, significant variations in accuracy (up to 35%) were observed, particularly when optimization was lacking. Notably, colorectal cancer exhibited the lowest accuracy (DNN 69%, CML 65.83%). A five-point comparative analysis (best/worst models, performance gap, average accuracy, and research trends) revealed that while DNN research is gaining momentum, CML approaches remain competitive, even outperforming DNN in some cases. This study presents an in-depth comparative analysis of CML and DNN techniques for cancer detection. This knowledge can inform future research directions and contribute to the development of increasingly accurate and reliable cancer detection tools.
{"title":"A depth analysis of recent innovations in non-invasive techniques using artificial intelligence approach for cancer prediction.","authors":"Hari Mohan Rai, Joon Yoo, Abdul Razaque","doi":"10.1007/s11517-024-03158-0","DOIUrl":"10.1007/s11517-024-03158-0","url":null,"abstract":"<p><p>The fight against cancer, a relentless global health crisis, emphasizes the urgency for efficient and automated early detection methods. To address this critical need, this review assesses recent advances in non-invasive cancer prediction techniques, comparing conventional machine learning (CML) and deep neural networks (DNNs). Focusing on these seven major cancers, we analyze 310 publications spanning the years 2018 to 2024, focusing on detection accuracy as the key metric to identify the most effective predictive models, highlighting critical gaps in current methodologies, and suggesting directions for future research. We further delved into factors like datasets, features, and modalities to gain a comprehensive understanding of each approach's performance. Separate review tables for each cancer type and approach facilitated comparisons between top performers (accuracy exceeding 99%) and low performers (65.83 to 85.8%). Our exploration of public databases and commonly used classifiers revealed that optimal combinations of features, datasets, and models can achieve up to 100% accuracy for both CML and DNN. However, significant variations in accuracy (up to 35%) were observed, particularly when optimization was lacking. Notably, colorectal cancer exhibited the lowest accuracy (DNN 69%, CML 65.83%). A five-point comparative analysis (best/worst models, performance gap, average accuracy, and research trends) revealed that while DNN research is gaining momentum, CML approaches remain competitive, even outperforming DNN in some cases. This study presents an in-depth comparative analysis of CML and DNN techniques for cancer detection. This knowledge can inform future research directions and contribute to the development of increasingly accurate and reliable cancer detection tools.</p>","PeriodicalId":49840,"journal":{"name":"Medical & Biological Engineering & Computing","volume":" ","pages":"3555-3580"},"PeriodicalIF":4.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141621591","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-01Epub Date: 2024-07-16DOI: 10.1007/s11517-024-03163-3
Tomas Zilka, Wanda Benesova
Pituitary adenomas (PA) represent the most common type of sellar neoplasm. Extracting relevant information from radiological images is essential for decision support in addressing various objectives related to PA. Given the critical need for an accurate assessment of the natural progression of PA, computer vision (CV) and artificial intelligence (AI) play a pivotal role in automatically extracting features from radiological images. The field of "Radiomics" involves the extraction of high-dimensional features, often referred to as "Radiomic features," from digital radiological images. This survey offers an analysis of the current state of research in PA radiomics. Our work comprises a systematic review of 34 publications focused on PA radiomics and other automated information mining pertaining to PA through the analysis of radiological data using computer vision methods. We begin with a theoretical exploration essential for understanding the theoretical background of radionmics, encompassing traditional approaches from computer vision and machine learning, as well as the latest methodologies in deep radiomics utilizing deep learning (DL). Thirty-four research works under examination are comprehensively compared and evaluated. The overall results achieved in the analyzed papers are high, e.g., the best accuracy is up to 96% and the best achieved AUC is up to 0.99, which establishes optimism for the successful use of radiomic features. Methods based on deep learning seem to be the most promising for the future. In relation to this perspective DL methods, several challenges are remarkable: It is important to create high-quality and sufficiently extensive datasets necessary for training deep neural networks. Interpretability of deep radiomics is also a big open challenge. It is necessary to develop and verify methods that will explain to us how deep radiomic features reflect various physics-explainable aspects.
垂体腺瘤(PA)是最常见的蝶窦肿瘤。从放射图像中提取相关信息对于实现与垂体腺瘤相关的各种目标的决策支持至关重要。鉴于准确评估 PA 自然进展的迫切需要,计算机视觉(CV)和人工智能(AI)在自动提取放射图像特征方面发挥着关键作用。放射组学 "领域涉及从数字放射图像中提取高维特征,通常称为 "放射组学特征"。本调查分析了 PA 放射组学的研究现状。我们的工作包括对 34 篇关于 PA 放射组学和其他通过使用计算机视觉方法分析放射学数据进行 PA 相关自动信息挖掘的出版物进行系统回顾。我们首先进行了对了解放射组学理论背景至关重要的理论探索,包括计算机视觉和机器学习的传统方法,以及利用深度学习(DL)进行深度放射组学研究的最新方法。本研究对 34 篇研究成果进行了全面的比较和评估。所分析论文的总体结果很高,例如,最佳准确率高达 96%,最佳 AUC 高达 0.99,这为成功使用放射组学特征奠定了基础。基于深度学习的方法似乎是未来最有前途的方法。从这一角度看 DL 方法,有几项挑战值得注意:创建训练深度神经网络所需的高质量和足够广泛的数据集非常重要。深度放射组学的可解释性也是一个巨大的挑战。有必要开发和验证一些方法,向我们解释深度放射组学特征如何反映各种物理学可解释的方面。
{"title":"Radiomics of pituitary adenoma using computer vision: a review.","authors":"Tomas Zilka, Wanda Benesova","doi":"10.1007/s11517-024-03163-3","DOIUrl":"10.1007/s11517-024-03163-3","url":null,"abstract":"<p><p>Pituitary adenomas (PA) represent the most common type of sellar neoplasm. Extracting relevant information from radiological images is essential for decision support in addressing various objectives related to PA. Given the critical need for an accurate assessment of the natural progression of PA, computer vision (CV) and artificial intelligence (AI) play a pivotal role in automatically extracting features from radiological images. The field of \"Radiomics\" involves the extraction of high-dimensional features, often referred to as \"Radiomic features,\" from digital radiological images. This survey offers an analysis of the current state of research in PA radiomics. Our work comprises a systematic review of 34 publications focused on PA radiomics and other automated information mining pertaining to PA through the analysis of radiological data using computer vision methods. We begin with a theoretical exploration essential for understanding the theoretical background of radionmics, encompassing traditional approaches from computer vision and machine learning, as well as the latest methodologies in deep radiomics utilizing deep learning (DL). Thirty-four research works under examination are comprehensively compared and evaluated. The overall results achieved in the analyzed papers are high, e.g., the best accuracy is up to 96% and the best achieved AUC is up to 0.99, which establishes optimism for the successful use of radiomic features. Methods based on deep learning seem to be the most promising for the future. In relation to this perspective DL methods, several challenges are remarkable: It is important to create high-quality and sufficiently extensive datasets necessary for training deep neural networks. Interpretability of deep radiomics is also a big open challenge. It is necessary to develop and verify methods that will explain to us how deep radiomic features reflect various physics-explainable aspects.</p>","PeriodicalId":49840,"journal":{"name":"Medical & Biological Engineering & Computing","volume":" ","pages":"3581-3597"},"PeriodicalIF":2.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11568991/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141621592","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The segmentation of airway from computed tomography (CT) images plays a vital role in pulmonary disease diagnosis, evaluation, surgical planning, and treatment. Nevertheless, it is still challenging for current methods to handle distal thin and low-contrast airways, leading to mis-segmentation issues. This paper proposes a detail-sensitive 3D-UNet (DS-3D-UNet) that incorporates two new modules into 3D-UNet to segment airways accurately from CT images. The feature recalibration module is designed to give more attention to the foreground airway features through a new attention mechanism. The detail extractor module aims to restore multi-scale detailed features by fusion of features at different levels. Extensive experiments were conducted on the ATM'22 challenge dataset composed of 300 CT scans with airway annotations to evaluate its performance. Quantitative comparisons prove that the proposed model achieves the best performance in terms of Dice similarity coefficient (92.6%) and Intersection over Union (86.3%), outperforming other state-of-the-art methods. Qualitative comparisons further exhibit the superior performance of our method in segmenting thin and confused distal bronchi. The proposed model could provide important references for the diagnosis and treatment of pulmonary diseases, holding promising prospects in the field of digital medicine. Codes are available at https://github.com/nighlevil/DS-3D-UNet/tree/master .
{"title":"Detail-sensitive 3D-UNet for pulmonary airway segmentation from CT images.","authors":"Qin Zhang, Jiajie Li, Xiangling Nan, Xiaodong Zhang","doi":"10.1007/s11517-024-03169-x","DOIUrl":"10.1007/s11517-024-03169-x","url":null,"abstract":"<p><p>The segmentation of airway from computed tomography (CT) images plays a vital role in pulmonary disease diagnosis, evaluation, surgical planning, and treatment. Nevertheless, it is still challenging for current methods to handle distal thin and low-contrast airways, leading to mis-segmentation issues. This paper proposes a detail-sensitive 3D-UNet (DS-3D-UNet) that incorporates two new modules into 3D-UNet to segment airways accurately from CT images. The feature recalibration module is designed to give more attention to the foreground airway features through a new attention mechanism. The detail extractor module aims to restore multi-scale detailed features by fusion of features at different levels. Extensive experiments were conducted on the ATM'22 challenge dataset composed of 300 CT scans with airway annotations to evaluate its performance. Quantitative comparisons prove that the proposed model achieves the best performance in terms of Dice similarity coefficient (92.6%) and Intersection over Union (86.3%), outperforming other state-of-the-art methods. Qualitative comparisons further exhibit the superior performance of our method in segmenting thin and confused distal bronchi. The proposed model could provide important references for the diagnosis and treatment of pulmonary diseases, holding promising prospects in the field of digital medicine. Codes are available at https://github.com/nighlevil/DS-3D-UNet/tree/master .</p>","PeriodicalId":49840,"journal":{"name":"Medical & Biological Engineering & Computing","volume":" ","pages":"3749-3762"},"PeriodicalIF":4.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141629180","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-01Epub Date: 2024-06-27DOI: 10.1007/s11517-024-03149-1
K Naderi Beni, K Knutzen, J P Kuhtz-Buschbeck, N G Margraf, R Rieger
Camptocormia, a severe flexion deformity of the spine, presents challenges in monitoring its progression outside laboratory settings. This study introduces a customized method utilizing four inertial measurement unit (IMU) sensors for continuous recording of the camptocormia angle (CA), incorporating both the consensual malleolus and perpendicular assessment methods. The setup is wearable and mobile and allows measurements outside the laboratory environment. The practicality for measuring CA across various activities is evaluated for both the malleolus and perpendicular method in a mimicked Parkinson disease posture. Multiple activities are performed by a healthy volunteer. Measurements are compared against a camera-based reference system. Results show an overall root mean squared error (RMSE) of 4.13° for the malleolus method and 2.71° for the perpendicular method. Furthermore, patient-specific calibration during the standing still with forward lean activity significantly reduced the RMSE to 2.45° and 1.68° respectively. This study presents a novel approach to continuous CA monitoring outside the laboratory setting. The proposed system is suitable as a tool for monitoring the progression of camptocormia and for the first time implements the malleolus method with IMU. It holds promise for effectively monitoring camptocormia at home.
{"title":"Continuous mobile measurement of camptocormia angle using four accelerometers.","authors":"K Naderi Beni, K Knutzen, J P Kuhtz-Buschbeck, N G Margraf, R Rieger","doi":"10.1007/s11517-024-03149-1","DOIUrl":"10.1007/s11517-024-03149-1","url":null,"abstract":"<p><p>Camptocormia, a severe flexion deformity of the spine, presents challenges in monitoring its progression outside laboratory settings. This study introduces a customized method utilizing four inertial measurement unit (IMU) sensors for continuous recording of the camptocormia angle (CA), incorporating both the consensual malleolus and perpendicular assessment methods. The setup is wearable and mobile and allows measurements outside the laboratory environment. The practicality for measuring CA across various activities is evaluated for both the malleolus and perpendicular method in a mimicked Parkinson disease posture. Multiple activities are performed by a healthy volunteer. Measurements are compared against a camera-based reference system. Results show an overall root mean squared error (RMSE) of 4.13° for the malleolus method and 2.71° for the perpendicular method. Furthermore, patient-specific calibration during the standing still with forward lean activity significantly reduced the RMSE to 2.45° and 1.68° respectively. This study presents a novel approach to continuous CA monitoring outside the laboratory setting. The proposed system is suitable as a tool for monitoring the progression of camptocormia and for the first time implements the malleolus method with IMU. It holds promise for effectively monitoring camptocormia at home.</p>","PeriodicalId":49840,"journal":{"name":"Medical & Biological Engineering & Computing","volume":" ","pages":"3637-3652"},"PeriodicalIF":2.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11569011/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141460384","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-12-01Epub Date: 2024-07-15DOI: 10.1007/s11517-024-03168-y
Luis A Diaz Sanmartin, Aleksandra B Gruslova, Drew R Nolen, Marc D Feldman, Jonathan W Valvano
Percutaneous ventricular assist devices (pVADs) incorporated with admittance electrodes have been validated in animal studies for accurate instantaneous volumetric measurements. Since miniaturization of the pVAD profile is a priority to reduce vascular complications in patients, our study aimed to validate admittance measurements using three electrodes instead of the standard four. Complex admittance was measured between an electrode pair and a pVAD metallic blood-intake tip, both with finite element analysis and on the benchtop. The catheter and electrode arrays were first simulated inside prolate ellipsoid models of the left ventricle (LV) demonstrating current flow throughout all parts of the LV as well as minimal influence of off-center catheter placement in the recorded signal. Admittance measurements were validated in 3D-printed models of healthy and dilated hearts (100-400 mL end-diastolic volumes). Minimal interference between a pVAD motor and the current signal of our admittance system was demonstrated. A modified Wei's equation focused on three electrodes was developed to be compatible with reduced profile pVADs occurring clinically, incorporated with admittance electrodes and wires. The modified equation was compared against Wei's original equation showing improved accuracy of calculated volumes. Reducing electrode footprint can simplify the incorporation of Admittance technology on any pVAD, allowing for instantaneous recognition of native heart recovery and assistance with pVAD weaning.
{"title":"Measurement of left ventricular volume with admittance incorporated onto percutaneous ventricular assist device.","authors":"Luis A Diaz Sanmartin, Aleksandra B Gruslova, Drew R Nolen, Marc D Feldman, Jonathan W Valvano","doi":"10.1007/s11517-024-03168-y","DOIUrl":"10.1007/s11517-024-03168-y","url":null,"abstract":"<p><p>Percutaneous ventricular assist devices (pVADs) incorporated with admittance electrodes have been validated in animal studies for accurate instantaneous volumetric measurements. Since miniaturization of the pVAD profile is a priority to reduce vascular complications in patients, our study aimed to validate admittance measurements using three electrodes instead of the standard four. Complex admittance was measured between an electrode pair and a pVAD metallic blood-intake tip, both with finite element analysis and on the benchtop. The catheter and electrode arrays were first simulated inside prolate ellipsoid models of the left ventricle (LV) demonstrating current flow throughout all parts of the LV as well as minimal influence of off-center catheter placement in the recorded signal. Admittance measurements were validated in 3D-printed models of healthy and dilated hearts (100-400 mL end-diastolic volumes). Minimal interference between a pVAD motor and the current signal of our admittance system was demonstrated. A modified Wei's equation focused on three electrodes was developed to be compatible with reduced profile pVADs occurring clinically, incorporated with admittance electrodes and wires. The modified equation was compared against Wei's original equation showing improved accuracy of calculated volumes. Reducing electrode footprint can simplify the incorporation of Admittance technology on any pVAD, allowing for instantaneous recognition of native heart recovery and assistance with pVAD weaning.</p>","PeriodicalId":49840,"journal":{"name":"Medical & Biological Engineering & Computing","volume":" ","pages":"3737-3747"},"PeriodicalIF":4.6,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141617501","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}