干旱胁迫下三叶草1R-MYB转录因子家族的全基因组鉴定及TrMYB130的功能表征

IF 2.4 3区 生物学 Q2 GENETICS & HEREDITY Gene Pub Date : 2025-04-05 Epub Date: 2025-01-22 DOI:10.1016/j.gene.2025.149247
Zhirui He, Xiaofang Qin, Tong Jia, Tiangang Qi, Qinyu Zhou, Jiefang Liu, Yan Peng
{"title":"干旱胁迫下三叶草1R-MYB转录因子家族的全基因组鉴定及TrMYB130的功能表征","authors":"Zhirui He,&nbsp;Xiaofang Qin,&nbsp;Tong Jia,&nbsp;Tiangang Qi,&nbsp;Qinyu Zhou,&nbsp;Jiefang Liu,&nbsp;Yan Peng","doi":"10.1016/j.gene.2025.149247","DOIUrl":null,"url":null,"abstract":"<div><div>White clover (<em>Trifolium repens</em> L.) is a high-quality leguminous forage, but its short rooting habit, poor transpiration tolerance, and drought tolerance, have become a key factor restricting its growth and cultivation. 1R-MYB transcription factors (TFs) are a significant subfamily of TFs in plants, playing a vital role in regulating plant responses to drought stress, however, knowledge about the role of 1R-MYB transcription factors in white clover is still limited. We identified 134 1R-MYB members, which were unevenly designated onto 16 chromosomes and divided phylogenetically into five subgroups. The members of the same subgroup had conserved motifs. Collinearity analysis revealed that segmental and tandem duplications significantly contributed to the expansion of the <em>Tr1R-MYBs</em>. <em>Tr1R-MYBs</em> promoter region enriched with potential drought <em>cis</em>-acting regulatory elements. The RT-qPCR results show that the five <em>Tr1R-MYB</em> genes (<em>TrMYB41</em>, <em>TrMYB49</em>, <em>TrMYB94</em>, <em>TrMYB125</em>, <em>TrMYB130</em>) have a certain degree of response under drought stress conditions but exhibited different expression profiles. Furthermore, subcellular localization analysis showed that the <em>TrMYB130</em> protein is primarily located in the nucleus. Overexpression of this protein in transgenic Arabidopsis (<em>Arabidopsis thaliana</em> L.) was found to impair drought tolerance. Our findings will establish a basis for deeper investigation into the characteristics and functions of 1R-MYB TFs, as well as for employing genetic engineering techniques to improve white clover.</div></div>","PeriodicalId":12499,"journal":{"name":"Gene","volume":"943 ","pages":"Article 149247"},"PeriodicalIF":2.4000,"publicationDate":"2025-04-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Genome-wide identification of 1R-MYB transcription factors family and functional characterization of TrMYB130 under drought stresses in Trifolium repens (L.)\",\"authors\":\"Zhirui He,&nbsp;Xiaofang Qin,&nbsp;Tong Jia,&nbsp;Tiangang Qi,&nbsp;Qinyu Zhou,&nbsp;Jiefang Liu,&nbsp;Yan Peng\",\"doi\":\"10.1016/j.gene.2025.149247\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>White clover (<em>Trifolium repens</em> L.) is a high-quality leguminous forage, but its short rooting habit, poor transpiration tolerance, and drought tolerance, have become a key factor restricting its growth and cultivation. 1R-MYB transcription factors (TFs) are a significant subfamily of TFs in plants, playing a vital role in regulating plant responses to drought stress, however, knowledge about the role of 1R-MYB transcription factors in white clover is still limited. We identified 134 1R-MYB members, which were unevenly designated onto 16 chromosomes and divided phylogenetically into five subgroups. The members of the same subgroup had conserved motifs. Collinearity analysis revealed that segmental and tandem duplications significantly contributed to the expansion of the <em>Tr1R-MYBs</em>. <em>Tr1R-MYBs</em> promoter region enriched with potential drought <em>cis</em>-acting regulatory elements. The RT-qPCR results show that the five <em>Tr1R-MYB</em> genes (<em>TrMYB41</em>, <em>TrMYB49</em>, <em>TrMYB94</em>, <em>TrMYB125</em>, <em>TrMYB130</em>) have a certain degree of response under drought stress conditions but exhibited different expression profiles. Furthermore, subcellular localization analysis showed that the <em>TrMYB130</em> protein is primarily located in the nucleus. Overexpression of this protein in transgenic Arabidopsis (<em>Arabidopsis thaliana</em> L.) was found to impair drought tolerance. Our findings will establish a basis for deeper investigation into the characteristics and functions of 1R-MYB TFs, as well as for employing genetic engineering techniques to improve white clover.</div></div>\",\"PeriodicalId\":12499,\"journal\":{\"name\":\"Gene\",\"volume\":\"943 \",\"pages\":\"Article 149247\"},\"PeriodicalIF\":2.4000,\"publicationDate\":\"2025-04-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Gene\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0378111925000356\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/1/22 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q2\",\"JCRName\":\"GENETICS & HEREDITY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Gene","FirstCategoryId":"99","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0378111925000356","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/1/22 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"GENETICS & HEREDITY","Score":null,"Total":0}
引用次数: 0

摘要

白三叶草(Trifolium repens L.)是一种优质豆科牧草,但其生根习性短、耐蒸腾和耐旱性差,已成为制约其生长和栽培的关键因素。1R-MYB转录因子是植物中一个重要的转录因子亚家族,在调节植物对干旱胁迫的响应中起着至关重要的作用,然而,关于1R-MYB转录因子在白三叶草中的作用的认识仍然有限。我们鉴定出134个1R-MYB成员,这些成员不均匀地分布在16条染色体上,并在系统发育上分为5个亚群。同一亚群的成员具有保守的基序。共线性分析显示,片段重复和串联重复显著促进了tr1r - myb的扩增。Tr1R-MYBs启动子区富含潜在的干旱顺式调控元件。RT-qPCR结果显示,5个Tr1R-MYB基因(TrMYB41、TrMYB49、TrMYB94、TrMYB125、TrMYB130)在干旱胁迫条件下均有一定程度的响应,但表达谱不同。此外,亚细胞定位分析表明,TrMYB130蛋白主要位于细胞核中。该蛋白在转基因拟南芥(Arabidopsis thaliana L.)中的过表达会损害其耐旱性。本研究结果将为深入研究1R-MYB TFs的特性和功能,以及利用基因工程技术对白三叶进行改良奠定基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
查看原文
分享 分享
微信好友 朋友圈 QQ好友 复制链接
本刊更多论文
Genome-wide identification of 1R-MYB transcription factors family and functional characterization of TrMYB130 under drought stresses in Trifolium repens (L.)
White clover (Trifolium repens L.) is a high-quality leguminous forage, but its short rooting habit, poor transpiration tolerance, and drought tolerance, have become a key factor restricting its growth and cultivation. 1R-MYB transcription factors (TFs) are a significant subfamily of TFs in plants, playing a vital role in regulating plant responses to drought stress, however, knowledge about the role of 1R-MYB transcription factors in white clover is still limited. We identified 134 1R-MYB members, which were unevenly designated onto 16 chromosomes and divided phylogenetically into five subgroups. The members of the same subgroup had conserved motifs. Collinearity analysis revealed that segmental and tandem duplications significantly contributed to the expansion of the Tr1R-MYBs. Tr1R-MYBs promoter region enriched with potential drought cis-acting regulatory elements. The RT-qPCR results show that the five Tr1R-MYB genes (TrMYB41, TrMYB49, TrMYB94, TrMYB125, TrMYB130) have a certain degree of response under drought stress conditions but exhibited different expression profiles. Furthermore, subcellular localization analysis showed that the TrMYB130 protein is primarily located in the nucleus. Overexpression of this protein in transgenic Arabidopsis (Arabidopsis thaliana L.) was found to impair drought tolerance. Our findings will establish a basis for deeper investigation into the characteristics and functions of 1R-MYB TFs, as well as for employing genetic engineering techniques to improve white clover.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Gene
Gene 生物-遗传学
CiteScore
6.10
自引率
2.90%
发文量
718
审稿时长
42 days
期刊介绍: Gene publishes papers that focus on the regulation, expression, function and evolution of genes in all biological contexts, including all prokaryotic and eukaryotic organisms, as well as viruses.
期刊最新文献
Differential expression patterns of circulating NEAT1, HOTAIR, and miR-23b in rheumatoid arthritis: Implications for molecular diagnosis Renal Cell Carcinoma: Histopathology, Molecular Features, and the Emerging Role of Organoid Models Editoŕs corner: repetitive DNA landscapes in the era of large-scale genomic datasets and data integration. Genome-wide identification of the CCCH-type zinc finger gene family and functional characterization of PbrC3H45 in lignin biosynthesis of pear. GC3-biased, selection-shaped codon usage in WRKY, NAC and C2H2 transcription factor families of foxtail millet (Setaria italica).
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
已复制链接
已复制链接
快去分享给好友吧!
我知道了
×
扫码分享
扫码分享
Book学术官方微信
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1