Uniconf:一种具有广泛适用性的替代一致性生成器

IF 3.1 3区 化学 Q3 CHEMISTRY, PHYSICAL Chemical Physics Letters Pub Date : 2025-02-01 Epub Date: 2024-12-07 DOI:10.1016/j.cplett.2024.141813
Yury Minenkov
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引用次数: 0

摘要

Uniconf程序旨在对分子簇和具有可旋转键的分离分子进行构象搜索/采样。与其他方法不同,生成构象的空间结构多样性优先于针对半经验方法或力场最小能量结构。该代码是测试在产生气相构象过渡金属配合物,生物活性寡肽,和钠离子微溶剂化簇。在三分之一的情况下,与先前发现的构象相比,产生了更稳定或同样稳定的构象。几乎所有化合物都获得了比文献中可用的能量更多样化的结构。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Uniconf: An alternative conformer generator with broad applicability
The Uniconf program aimed at conformational search/sampling in molecular clusters and isolated molecules with rotatable bonds has been developed. Unlike the other approaches, the spatial structural diversity of generated conformations is prioritized over targeting a semiempirical method or a force field minimum energy structures. The code is tested in generating of the gas-phase conformers for transition metal complexes, biologically active oligopeptides, and sodium ion microsolvated clusters. In one third of cases, either more or equally stable conformers compared to the previously found ones were generated. Energetically more diverse structures than available in the literature were obtained for practically all compounds.
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来源期刊
Chemical Physics Letters
Chemical Physics Letters 化学-物理:原子、分子和化学物理
CiteScore
5.70
自引率
3.60%
发文量
798
审稿时长
33 days
期刊介绍: Chemical Physics Letters has an open access mirror journal, Chemical Physics Letters: X, sharing the same aims and scope, editorial team, submission system and rigorous peer review. Chemical Physics Letters publishes brief reports on molecules, interfaces, condensed phases, nanomaterials and nanostructures, polymers, biomolecular systems, and energy conversion and storage. Criteria for publication are quality, urgency and impact. Further, experimental results reported in the journal have direct relevance for theory, and theoretical developments or non-routine computations relate directly to experiment. Manuscripts must satisfy these criteria and should not be minor extensions of previous work.
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