{"title":"Uniconf:一种具有广泛适用性的替代一致性生成器","authors":"Yury Minenkov","doi":"10.1016/j.cplett.2024.141813","DOIUrl":null,"url":null,"abstract":"<div><div>The Uniconf program aimed at conformational search/sampling in molecular clusters and isolated molecules with rotatable bonds has been developed. Unlike the other approaches, the spatial structural diversity of generated conformations is prioritized over targeting a semiempirical method or a force field minimum energy structures. The code is tested in generating of the gas-phase conformers for transition metal complexes, biologically active oligopeptides, and sodium ion microsolvated clusters. In one third of cases, either more or equally stable conformers compared to the previously found ones were generated. Energetically more diverse structures than available in the literature were obtained for practically all compounds.</div></div>","PeriodicalId":273,"journal":{"name":"Chemical Physics Letters","volume":"860 ","pages":"Article 141813"},"PeriodicalIF":3.1000,"publicationDate":"2025-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Uniconf: An alternative conformer generator with broad applicability\",\"authors\":\"Yury Minenkov\",\"doi\":\"10.1016/j.cplett.2024.141813\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>The Uniconf program aimed at conformational search/sampling in molecular clusters and isolated molecules with rotatable bonds has been developed. Unlike the other approaches, the spatial structural diversity of generated conformations is prioritized over targeting a semiempirical method or a force field minimum energy structures. The code is tested in generating of the gas-phase conformers for transition metal complexes, biologically active oligopeptides, and sodium ion microsolvated clusters. In one third of cases, either more or equally stable conformers compared to the previously found ones were generated. Energetically more diverse structures than available in the literature were obtained for practically all compounds.</div></div>\",\"PeriodicalId\":273,\"journal\":{\"name\":\"Chemical Physics Letters\",\"volume\":\"860 \",\"pages\":\"Article 141813\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2025-02-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Chemical Physics Letters\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0009261424007553\",\"RegionNum\":3,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/12/7 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q3\",\"JCRName\":\"CHEMISTRY, PHYSICAL\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Chemical Physics Letters","FirstCategoryId":"92","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0009261424007553","RegionNum":3,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/12/7 0:00:00","PubModel":"Epub","JCR":"Q3","JCRName":"CHEMISTRY, PHYSICAL","Score":null,"Total":0}
Uniconf: An alternative conformer generator with broad applicability
The Uniconf program aimed at conformational search/sampling in molecular clusters and isolated molecules with rotatable bonds has been developed. Unlike the other approaches, the spatial structural diversity of generated conformations is prioritized over targeting a semiempirical method or a force field minimum energy structures. The code is tested in generating of the gas-phase conformers for transition metal complexes, biologically active oligopeptides, and sodium ion microsolvated clusters. In one third of cases, either more or equally stable conformers compared to the previously found ones were generated. Energetically more diverse structures than available in the literature were obtained for practically all compounds.
期刊介绍:
Chemical Physics Letters has an open access mirror journal, Chemical Physics Letters: X, sharing the same aims and scope, editorial team, submission system and rigorous peer review.
Chemical Physics Letters publishes brief reports on molecules, interfaces, condensed phases, nanomaterials and nanostructures, polymers, biomolecular systems, and energy conversion and storage.
Criteria for publication are quality, urgency and impact. Further, experimental results reported in the journal have direct relevance for theory, and theoretical developments or non-routine computations relate directly to experiment. Manuscripts must satisfy these criteria and should not be minor extensions of previous work.