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The influence of intramolecular isotope effects on the reaction mechanisms of Ca+ + HD 分子内同位素效应对 Ca+ + HD 反应机制的影响
IF 2.8 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-09-26 DOI: 10.1016/j.cplett.2024.141665
The state-to-state quantum dynamics of the Ca+ + HD reaction is investigated at collision energies ranging from 2.0 to 4.0 eV based on a non-adiabatic potential energy surface. The integral cross sections are calculated and compared with previous experimental results. The integral cross section of CaH+ is significantly larger than that of CaD+. Additionally, the differential cross sections for CaH+ and CaD+ exhibit distinct trends. Rovibrationally state resolved differential cross sections reveal that the reaction for CaH+ is dominated by the ‘knockout’ mechanism, while the reaction for CaD+ is primarily governed by the stripping mechanism.
基于非绝热势能面,研究了在碰撞能量为 2.0 至 4.0 eV 时 Ca+ + HD 反应的态对态量子动力学。计算了积分截面,并与之前的实验结果进行了比较。CaH+ 的积分截面明显大于 CaD+。此外,CaH+ 和 CaD+ 的微分截面呈现出不同的趋势。振荡态分辨微分截面显示,CaH+ 的反应由 "敲除 "机制主导,而 CaD+ 的反应主要受剥离机制支配。
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引用次数: 0
Electronic structure of ultrathin single-walled platinum nanotubes 超薄单壁铂纳米管的电子结构
IF 2.8 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-09-26 DOI: 10.1016/j.cplett.2024.141664
Using Density Functional Theory based on the plane wave method and linearized augmented cylindrical wave method, and taking into account the spin–orbit interaction, the structural, electronic and spin properties of ultrathin single-walled nanotubes consisting of six platinum rows are obtained. The nanotubes are found to possess metallic electronic mobility, including the nonchiral Pt(6,0) with the largest number (15G0) of ballistic channels. Analysis of the density of electronic states at Fermi level revealed that the chiral Pt(5,1) has a difference in concentration of mobile electrons with opposite spins of 1.42 times, and up to 3–4 times under a weak torsional strain.
利用基于平面波法和线性化增强圆柱波法的密度泛函理论,并考虑到自旋轨道相互作用,获得了由六排铂组成的超薄单壁纳米管的结构、电子和自旋特性。研究发现,纳米管具有金属电子迁移率,其中非手性铂(6,0)具有最多的弹道数(15G0)。费米级电子态密度分析表明,手性铂(5,1)具有相反自旋的移动电子浓度差为 1.42 倍,在弱扭转应变下可达 3-4 倍。
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引用次数: 0
Development of a robust Machine learning model for Ames test outcome prediction 为艾姆斯试验结果预测开发稳健的机器学习模型
IF 2.8 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-09-26 DOI: 10.1016/j.cplett.2024.141663
The mutagenicity is an essential parameter for evaluating the safety of pharmaceuticals, chemicals, consumer products, environmentally related compounds and the Ames assay is a significant test for predicting the mutagenicity of chemical compounds. In the data-driven era, developing robust models for efficient mutagenicity prediction before synthesizing and testing in vitro has gained increasing attention. In this study, a machine learning model that could predict Ames mutagenicity based on 2D molecular descriptors was developed. A multistep filtering process that adequately helps in identifying significant descriptors was adopted in this study. Three different sets of descriptors, namely, RDKit, Mordred and CDK were used to train three machine learning algorithms, viz., random forest, xgboost and catboost. The datasets were collected from different resources to develop a robust machine learning model. The robustness of this model was further validated by comparing different available ML and DL models for Ames genotoxicity. Specifically, 12 models, including our xgboost model, were used to validate an external dataset, and our model exhibited excellent performance, with an impressive AUC of 0.97. The codes to predict the genotoxicity of a molecule is available at https://github.com/Naga270588/Genotoxicity.
致突变性是评估药物、化学品、消费品和环境相关化合物安全性的一个重要参数,而艾姆斯试验是预测化合物致突变性的一个重要试验。在数据驱动的时代,在合成和体外测试之前开发出高效的致突变性预测模型越来越受到重视。本研究开发了一种基于二维分子描述符的机器学习模型,可预测阿姆斯诱变性。本研究采用了一个多步骤过滤过程,以充分帮助识别重要的描述符。三组不同的描述符(即 RDKit、Mordred 和 CDK)被用于训练三种机器学习算法,即随机森林算法、xgboost 算法和 catboost 算法。数据集是从不同资源中收集的,用于开发稳健的机器学习模型。通过比较不同的现有艾姆斯遗传毒性 ML 和 DL 模型,进一步验证了该模型的稳健性。具体来说,包括我们的 xgboost 模型在内的 12 个模型被用于验证外部数据集,我们的模型表现出卓越的性能,AUC 达到了令人印象深刻的 0.97。预测分子遗传毒性的代码见 https://github.com/Naga270588/Genotoxicity。
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引用次数: 0
Structural and electronic properties of amorphous silicon and germanium monolayers and nanotubes: A DFT investigation 非晶硅和锗单层及纳米管的结构和电子特性:DFT 研究
IF 2.8 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-09-26 DOI: 10.1016/j.cplett.2024.141647
A recent breakthrough has been achieved by synthesizing monolayer amorphous carbon (MAC). Here, we used ab initio (DFT) molecular dynamics simulations to study silicon and germanium MAC analogs. Typical unit cells contain more than 600 atoms. We also considered their corresponding nanotube structures. The cohesion energy values for MASi and MAGe are approximately 3.0 eV/atom lower than the energy ordering of silicene and germanene, respectively. Their electronic behavior varies from metallic to small band gap semiconductors. Since silicene, germanene, and MAC have already been experimentally realized, the corresponding MAC-like versions we propose are within our present synthetic capabilities.
单层无定形碳(MAC)的合成最近取得了突破性进展。在此,我们使用 ab initio (DFT) 分子动力学模拟来研究硅和锗 MAC 类似物。典型的单元格包含 600 多个原子。我们还考虑了它们相应的纳米管结构。MASi 和 MAGe 的内聚能值分别比硅烯和锗烯的能级低约 3.0 eV/原子。它们的电子行为从金属到小带隙半导体各不相同。由于硅烯、锗烯和 MAC 已经在实验中实现,我们提出的相应的类 MAC 版本也在我们目前的合成能力范围之内。
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引用次数: 0
Effect of reverse conjugated structure on charge transfer and photoabsorption characteristics of multi-branched molecules 反向共轭结构对多分支分子电荷转移和光吸收特性的影响
IF 2.8 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-09-25 DOI: 10.1016/j.cplett.2024.141662
The present work investigates effect of conjugated structure on two-photon absorption (TPA) and charge transfer characteristics of multi-branched molecules by DTF/TD-DFT and visualization methods. Results show that, compared with V-shaped and T-series counterparts, Y-shaped and R-series molecules exhibit great enhancement on TPA response. Strengthened cooperative effect among branches has been obtained by reversing conjugated structure or changing conjugated structure from V-shape to Y-shape, which has been approved by the TDM and CDD maps in the second step transition of TPA process. Our results indicate that constructing typical structures with suitable charge transfer directions is of great significance for improving performance.
本研究通过 DTF/TD-DFT 和可视化方法研究了共轭结构对多分支分子双光子吸收(TPA)和电荷转移特性的影响。结果表明,与 V 型和 T 系列分子相比,Y 型和 R 系列分子的双光子吸收响应有很大增强。通过反转共轭结构或将共轭结构从 V 型变为 Y 型,各分支之间的协同效应得到了加强,这在 TPA 过程的第二步转换中得到了 TDM 和 CDD 图的认可。我们的研究结果表明,构建具有合适电荷转移方向的典型结构对提高性能具有重要意义。
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引用次数: 0
Theoretical study on the enhanced nonlinear optical responses of sulflowers and selenosulflowers 关于苏铁花和硒苏铁花增强非线性光学响应的理论研究
IF 2.8 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-09-25 DOI: 10.1016/j.cplett.2024.141644
To develop highly efficient NLO materials for optoelectronic applications, theoretically, superhalogen-doped sulflower and selenosulflower were studied. The DFT/B3LYP-D3/6–311++G(2d,2p) basis set is used to complete the inquiry. The NLO properties of these complexes were assessed using, vertical ionization energy, and Electron Density Difference Map (EDDM) methods. The EDDM results reveal the electron transfer from sulflower to superhalogens leads to a donor–acceptor mechanism, which enhances hyperpolarizability. Superhalogen-doped sulflowers exhibit more prominent NLO properties than the undoped ligands, including static and dynamic NLO characteristics. This enhancement is due to the distortion of centrosymmetry and charge transfer between the sulflower and the doped superhalogen.
为了开发用于光电应用的高效 NLO 材料,我们从理论上研究了掺杂超卤素的素馨花和硒素馨花。研究采用 DFT/B3LYP-D3/6-311++G(2d,2p) 基集完成。使用垂直电离能和电子密度差图(EDDM)方法评估了这些复合物的 NLO 特性。EDDM 结果显示,电子从磺花转移到超卤素会导致一种供体-受体机制,从而增强超极化性。与未掺杂配体相比,掺杂了超卤素的硫华表现出更突出的 NLO 特性,包括静态和动态 NLO 特性。这种增强是由于砜和掺杂超卤素之间的中心对称变形和电荷转移。
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引用次数: 0
Ionizing radiation induced reaction in nanoclay hydrogel 纳米粘土水凝胶中的电离辐射诱导反应
IF 2.8 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-09-24 DOI: 10.1016/j.cplett.2024.141656
Reactions induced by ionizing radiation in LAPONITE-XLG nanoclay hydrogel were investigated and compared with those in alkaline aqueous solutions using ns-pulse radiolysis. The LAPONITE concentration did not affect the decay rate of hydrated electrons in 1 and 2 wt% hydrogel. The scavenging of hydrated electrons by pyridine was examined in 2 wt% hydrogel, and was consistent with the reaction in aqueous solution. The absence of a “cage-effect” or adsorption effect for pyridine or pyridinium was found. This suggests that LAPONITE behaves as an inert material on condition that solute adsorption does not occur.
研究了电离辐射在 LAPONITE-XLG 纳米粘土水凝胶中诱导的反应,并使用 ns 脉冲辐射分解将其与碱性水溶液中的反应进行了比较。LAPONITE 的浓度不会影响 1 和 2 wt% 水凝胶中水合电子的衰减率。在 2 wt%的水凝胶中检测了吡啶对水合电子的清除作用,结果与水溶液中的反应一致。发现吡啶或吡啶鎓没有 "笼效应 "或吸附效应。这表明,在不发生溶质吸附的条件下,LAPONITE 表现为一种惰性材料。
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引用次数: 0
The electronic structure and optical properties of BaBiBO4, a promising compound with high birefringence 具有高双折射性的潜力化合物 BaBiBO4 的电子结构和光学特性
IF 2.8 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-09-24 DOI: 10.1016/j.cplett.2024.141657
Birefringence is a crucial parameter for various advanced optical devices like birefringent crystals, and nonlinear optical materials. In this paper, the electronic structures and optical properties of centrosymmetric BaBiBO4 are investigated using the first-principles method. The results show that BaBiBO4 could be a good birefringent compound whose birefringence is 0.195 @ 1064 nm and 0.266 @ 532 nm. The spin–orbit-coupling effect plays an important role in electronic structures, leading to downshift and band splitting of the conduction band, resulting in a reduced bandgap of 3.32 eV and enhanced birefringence. The projected density of states and real-space atom-cutting results reveal that BiO5 groups with asymmetric distribution of stereochemical active lone pairs and the staggered parallel arrangement of the BO3 groups give the main contribution to birefringence.
双折射是双折射晶体和非线性光学材料等各种先进光学设备的重要参数。本文采用第一原理方法研究了中心对称 BaBiBO4 的电子结构和光学性质。结果表明,BaBiBO4 是一种良好的双折射化合物,其双折射度为 0.195 @ 1064 nm 和 0.266 @ 532 nm。自旋轨道耦合效应在电子结构中发挥了重要作用,导致导带下移和带分裂,从而使带隙减小到 3.32 eV,并增强了双折射性。投影态密度和实空间原子切割结果表明,具有不对称立体化学活性孤对分布的 BiO5 基团和交错平行排列的 BO3 基团是双折射的主要原因。
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引用次数: 0
Synthesis and VOCs adsorption properties of Diatomite/FAU-type zeolite composites 硅藻土/FAU 型沸石复合材料的合成与 VOCs 吸附性能
IF 2.8 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-09-24 DOI: 10.1016/j.cplett.2024.141654
Adsorption technology utilizing zeolites as adsorbents is a highly efficient and cost-effective method for controlling the emission of volatile organic compounds (VOCs). Herein, two hierarchical diatomite/FAU-type zeolite composites were synthesized by a seeding-assisted secondary hydrothermal growth method and high-temperature hydrothermal dealumination, respectively. The adsorption properties of the composites for VOCs, such as toluene, ethyl acetate, n-heptane, methanol and acetone, were systematically evaluated. The pseudo-second-order model provided a perfect fit to adsorption kinetics, while the Langmuir model agreed the best with the adsorption isotherms. Furthermore, Dt/USY has remarkable recycling stability even after five regeneration cycles, resulting in outstanding VOCs adsorption efficacy.
利用沸石作为吸附剂的吸附技术是控制挥发性有机化合物(VOC)排放的一种高效、经济的方法。本文分别采用播种辅助二次水热生长法和高温水热发烟法合成了两种分层硅藻土/FAU型沸石复合材料。系统评估了复合材料对甲苯、乙酸乙酯、正庚烷、甲醇和丙酮等挥发性有机化合物的吸附性能。伪二阶模型完美地拟合了吸附动力学,而朗缪尔模型与吸附等温线的吻合度最高。此外,即使经过五个再生周期,Dt/USY 仍具有显著的循环稳定性,从而实现了出色的 VOCs 吸附效果。
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引用次数: 0
Investigation on the Gas-Phase reaction of OH radicals with p-Toluidine 关于 OH 自由基与对甲苯胺气相反应的研究
IF 2.8 3区 化学 Q3 CHEMISTRY, PHYSICAL Pub Date : 2024-09-24 DOI: 10.1016/j.cplett.2024.141653
The CCSD(T)//M06-2X/6–311++G(3df,2p) level of theory was used to build the potential energy surface of the p-toluidine + OH reaction. The calculated results show that p-CH3-C6H4-NH is the key product if T=300–2000 K with branching ratios from 50 % to 36 %. At higher temperatures, p-CH2-C6H4-NH2 prevails with product yield exceeding 34 %. Compared to the C6H5NH2 + OH reaction, the present reaction is slower; however, it is faster than the reactions of toluene and m-toluidine with OH radicals. The atmospheric lifetime of p-toluidine, 3.7 h, reveals that this compound can be lost quickly and has an insignificant impact on climate change.
利用 CCSD(T)//M06-2X/6-311++G(3df,2p) 理论水平建立了对甲苯胺 + -OH 反应的势能面。计算结果表明,在温度为 300-2000 K 时,p-CH3-C6H4--NH 是主要产物,支化率为 50% 至 36%。在更高温度下,p--CH2-C6H4-NH2 占主导地位,产物产率超过 34%。与 C6H5NH2 + -OH 反应相比,本反应速度较慢,但比甲苯和间甲苯胺与 -OH 自由基的反应要快。对甲苯胺在大气中的寿命为 3.7 小时,这表明这种化合物会很快消失,对气候变化的影响不大。
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引用次数: 0
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Chemical Physics Letters
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