将计算和实验见解整合到渗透驱动的kaustophilus l -天冬酰胺酶的激活中,以缓解丙烯酰胺

IF 5.2 2区 化学 Q2 CHEMISTRY, PHYSICAL Journal of Molecular Liquids Pub Date : 2025-04-01 Epub Date: 2025-02-01 DOI:10.1016/j.molliq.2025.127072
F.İnci Özdemir , Burak Servili , Özge Demirtaş , Gözde Şükür , Ahmet Tülek , Deniz Yildirim
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引用次数: 0

摘要

渗透物在提高酶的稳定性和活性方面起着至关重要的作用。本研究系统地研究了不同渗透剂对喜热的考氏地杆菌(Geobacillus kaustophilus, GkASNase) l -天冬酰胺酶的活性、最佳pH、温度、稳定性、金属离子效应、储存和丙烯酰胺减缓性能的影响。实验结果进一步得到了同源建模、对接和分子动力学(MD)模拟等计算集成工具的支持。在选定的渗透物(麦芽糖、山梨醇、海藻糖、甘氨酸和蔗糖)中,GkASNase在麦芽糖和精氨酸存在的情况下,在30天的储存中表现出最高的稳定性。麦芽糖在37°C和55°C时使GkASNase活性增加约2倍。在37°C和55°C条件下,GkASNase的Km值与对照相比降低,Vmax值升高。在渗透物存在的情况下,GkASNase的丙烯酰胺缓解性能在15分钟的反应中提高了1.7倍。计算分析表明,l -天冬酰胺作为底物增强了蛋白质的致密性和稳定性,而精氨酸作为渗透物增加了灵活性并优化了酶周围的水分分布。这些发现为酶稳定提供了新的见解,对治疗和生物技术应用具有重要意义。
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Integrating computational and experimental insights into osmolyte-driven activation of Geobacillus kaustophilus L-asparaginase for acrylamide mitigation
Osmolytes play a critical role in enhancing the stability and activity of enzymes for industrial applications. This study systematically investigated the effects of various osmolytes on the activity, optimal pH, temperature, stability, metal ion effects, storage, and acrylamide mitigation performance of L-asparaginase from the thermophilic Geobacillus kaustophilus (GkASNase). The experimental findings were further supported by computationally integrated tools such as homology modeling, docking, and molecular dynamics (MD) simulations. Among the selected osmolytes (maltose, sorbitol, trehalose, glycine, and sucrose), GkASNase showed the highest stability during 30 days of storage in the presence of maltose and arginine. Maltose increased GkASNase activity approximately 2-fold at 37 °C and 55 °C. In the presence of osmolytes, the Km values of GkASNase decreased and the Vmax values increased compared to controls at 37 °C and 55 °C. In the presence of osmolytes, the acrylamide mitigation performance of GkASNase increased by 1.7-fold in a 15 min reaction. The computational analysis indicates that L-asparagine as substrate enhances protein compactness and stability, while arginine as osmolyte increases flexibility and optimizes water distribution around the enzyme. These findings provide novel insights into enzyme stabilization that have implications for therapeutic and biotechnological applications.
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来源期刊
Journal of Molecular Liquids
Journal of Molecular Liquids 化学-物理:原子、分子和化学物理
CiteScore
10.30
自引率
16.70%
发文量
2597
审稿时长
78 days
期刊介绍: The journal includes papers in the following areas: – Simple organic liquids and mixtures – Ionic liquids – Surfactant solutions (including micelles and vesicles) and liquid interfaces – Colloidal solutions and nanoparticles – Thermotropic and lyotropic liquid crystals – Ferrofluids – Water, aqueous solutions and other hydrogen-bonded liquids – Lubricants, polymer solutions and melts – Molten metals and salts – Phase transitions and critical phenomena in liquids and confined fluids – Self assembly in complex liquids.– Biomolecules in solution The emphasis is on the molecular (or microscopic) understanding of particular liquids or liquid systems, especially concerning structure, dynamics and intermolecular forces. The experimental techniques used may include: – Conventional spectroscopy (mid-IR and far-IR, Raman, NMR, etc.) – Non-linear optics and time resolved spectroscopy (psec, fsec, asec, ISRS, etc.) – Light scattering (Rayleigh, Brillouin, PCS, etc.) – Dielectric relaxation – X-ray and neutron scattering and diffraction. Experimental studies, computer simulations (MD or MC) and analytical theory will be considered for publication; papers just reporting experimental results that do not contribute to the understanding of the fundamentals of molecular and ionic liquids will not be accepted. Only papers of a non-routine nature and advancing the field will be considered for publication.
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