Lucas S Medeiros, Sergio M Q Lima, Mario de Pinna, Igor C A Souto-Santos, Stacy Pirro, Waldir M Berbel-Filho
{"title":"大西洋森林稀有和濒危鲶鱼2种Listrura和5种Microcambeva (trichomycterae, Siluriformes)的全基因组测序。","authors":"Lucas S Medeiros, Sergio M Q Lima, Mario de Pinna, Igor C A Souto-Santos, Stacy Pirro, Waldir M Berbel-Filho","doi":"10.56179/001c.127693","DOIUrl":null,"url":null,"abstract":"<p><p><i>Listrura</i> and <i>Microcambeva</i> are two genera of small, rare and elusive catfishes of the Trichomycteridae family, endemic to the Atlantic Forest coastal drainages in Brazil. <i>Listrura</i> comprises 13 species with slender bodies, absent pelvic fins, and a distinct caudal-fin and caudal-peduncle morphology, while <i>Microcambeva</i> includes eight species with translucent bodies, typically buried in sandy substrates with exposed nasal barbels. The two genera inhabit fragile environments that are undergoing accelerated degradation, with <i>Listrura camposae</i> and <i>L. nematopteryx</i> classified as \"Critically Endangered\" (CR), and <i>L. picinguabae</i> as \"Near Threatened\" (NT). <i>Microcambeva</i> species face similar threats, with <i>M. bendego</i> proposed as CR and <i>M. draco</i> as \"Endangered\" (EN). Over the past two decades, collection efforts and taxonomic descriptions have expanded the diversity of these two genera, with descriptions of 11 species of <i>Listrura</i> and seven of <i>Microcambeva</i> species in that period. To address gaps in genetic data for those taxa, we herein present draft version of whole-genome sequences for two <i>Listrura</i> species - <i>L. nematopteryx</i> and <i>L. boticario</i> - and five <i>Microcambeva</i> species - <i>M. barbata</i>, <i>M. watu</i>, <i>M. jucuensis</i>, <i>M. bendego</i>, and <i>M. ribeirae</i>. These genomic data are critical for future studies on the evolutionary history and systematics of these unique catfishes, contributing to foundational knowledge of their biodiversity.</p>","PeriodicalId":72362,"journal":{"name":"Biodiversity genomes","volume":"2024 ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11801385/pdf/","citationCount":"0","resultStr":"{\"title\":\"Whole-Genome Sequencing of two <i>Listrura</i> and five <i>Microcambeva</i> Species (Trichomycteridae, Siluriformes), Rare and Threatened catfishes from the Atlantic Forest.\",\"authors\":\"Lucas S Medeiros, Sergio M Q Lima, Mario de Pinna, Igor C A Souto-Santos, Stacy Pirro, Waldir M Berbel-Filho\",\"doi\":\"10.56179/001c.127693\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>Listrura</i> and <i>Microcambeva</i> are two genera of small, rare and elusive catfishes of the Trichomycteridae family, endemic to the Atlantic Forest coastal drainages in Brazil. <i>Listrura</i> comprises 13 species with slender bodies, absent pelvic fins, and a distinct caudal-fin and caudal-peduncle morphology, while <i>Microcambeva</i> includes eight species with translucent bodies, typically buried in sandy substrates with exposed nasal barbels. The two genera inhabit fragile environments that are undergoing accelerated degradation, with <i>Listrura camposae</i> and <i>L. nematopteryx</i> classified as \\\"Critically Endangered\\\" (CR), and <i>L. picinguabae</i> as \\\"Near Threatened\\\" (NT). <i>Microcambeva</i> species face similar threats, with <i>M. bendego</i> proposed as CR and <i>M. draco</i> as \\\"Endangered\\\" (EN). Over the past two decades, collection efforts and taxonomic descriptions have expanded the diversity of these two genera, with descriptions of 11 species of <i>Listrura</i> and seven of <i>Microcambeva</i> species in that period. To address gaps in genetic data for those taxa, we herein present draft version of whole-genome sequences for two <i>Listrura</i> species - <i>L. nematopteryx</i> and <i>L. boticario</i> - and five <i>Microcambeva</i> species - <i>M. barbata</i>, <i>M. watu</i>, <i>M. jucuensis</i>, <i>M. bendego</i>, and <i>M. ribeirae</i>. These genomic data are critical for future studies on the evolutionary history and systematics of these unique catfishes, contributing to foundational knowledge of their biodiversity.</p>\",\"PeriodicalId\":72362,\"journal\":{\"name\":\"Biodiversity genomes\",\"volume\":\"2024 \",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-12-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11801385/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biodiversity genomes\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.56179/001c.127693\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/12/30 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biodiversity genomes","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.56179/001c.127693","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/12/30 0:00:00","PubModel":"Epub","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
Listrura和Microcambeva是毛滴虫科的两种小型,稀有和难以捉摸的鲶鱼,是巴西大西洋森林沿岸排水的特有物种。Listrura有13种,身体细长,没有腹鳍,尾鳍和尾柄形态明显;Microcambeva有8种,身体半透明,通常埋在沙质基质中,鼻刺暴露在外。这两个属栖息在正在加速退化的脆弱环境中,Listrura camposae和L. nematopteryx被列为“极度濒危”(CR), L. picinguabae被列为“近危”(NT)。小cambeva物种面临着类似的威胁,其中M. bendego被列为CR, M. draco被列为“濒危”(EN)。在过去的20年里,收集工作和分类描述扩大了这两个属的多样性,在这一时期,Listrura和Microcambeva分别描述了11种和7种。为了解决这些分类群遗传数据的空白,我们在此提出了两个Listrura物种(L. nematopteryx和L. boticario)和五个Microcambeva物种(M. barbata, M. watu, M. juuensis, M. bendego和M. ribeirae)的全基因组序列草案。这些基因组数据对未来研究这些独特鲶鱼的进化历史和系统分类学具有重要意义,有助于了解其生物多样性的基础知识。
Whole-Genome Sequencing of two Listrura and five Microcambeva Species (Trichomycteridae, Siluriformes), Rare and Threatened catfishes from the Atlantic Forest.
Listrura and Microcambeva are two genera of small, rare and elusive catfishes of the Trichomycteridae family, endemic to the Atlantic Forest coastal drainages in Brazil. Listrura comprises 13 species with slender bodies, absent pelvic fins, and a distinct caudal-fin and caudal-peduncle morphology, while Microcambeva includes eight species with translucent bodies, typically buried in sandy substrates with exposed nasal barbels. The two genera inhabit fragile environments that are undergoing accelerated degradation, with Listrura camposae and L. nematopteryx classified as "Critically Endangered" (CR), and L. picinguabae as "Near Threatened" (NT). Microcambeva species face similar threats, with M. bendego proposed as CR and M. draco as "Endangered" (EN). Over the past two decades, collection efforts and taxonomic descriptions have expanded the diversity of these two genera, with descriptions of 11 species of Listrura and seven of Microcambeva species in that period. To address gaps in genetic data for those taxa, we herein present draft version of whole-genome sequences for two Listrura species - L. nematopteryx and L. boticario - and five Microcambeva species - M. barbata, M. watu, M. jucuensis, M. bendego, and M. ribeirae. These genomic data are critical for future studies on the evolutionary history and systematics of these unique catfishes, contributing to foundational knowledge of their biodiversity.