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The Complete Genome Sequences of 22 Species of Owls (Strigiformes, Aves). 22种猫头鹰(鹰形目,鸟类)的全基因组序列。
Pub Date : 2025-01-01 Epub Date: 2025-01-10 DOI: 10.56179/001c.128167
Taylor Hains, Therese Catanach, Stacy Pirro, John Bates, Shannon Hackett

We present the complete genome sequences of 22 species of owls. Illumina sequencing was performed on DNA extracted from wild-caught specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.

本文报道了22种猫头鹰的全基因组序列。对野生捕获标本提取的DNA进行Illumina测序。使用从头开始的方法组装reads,然后进行收尾步骤。原始和汇总的数据可通过Genbank公开获取。
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引用次数: 0
The Complete Genome Sequences of 20 Species of African Tetras and Relatives of Families Alestidae, Hepsetidae, and Lepidarchidae (Teleostei: Characiformes).
Pub Date : 2025-01-01 DOI: 10.56179/001c.128235
Bruno F Melo Melo, Stacy Pirro, Melanie L J Stiassny

We present the complete genome sequences of 20 species of African tetras, robbers, and tigerfishes in the families Alestidae, Hepsetidae, and Lepidarchidae. Illumina sequencing was performed on genetic material from wild-caught and aquarium specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank.

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引用次数: 0
Whole-Genome Sequencing of two Listrura and five Microcambeva Species (Trichomycteridae, Siluriformes), Rare and Threatened catfishes from the Atlantic Forest.
Pub Date : 2024-12-01 Epub Date: 2024-12-30 DOI: 10.56179/001c.127693
Lucas S Medeiros, Sergio M Q Lima, Mario de Pinna, Igor C A Souto-Santos, Stacy Pirro, Waldir M Berbel-Filho

Listrura and Microcambeva are two genera of small, rare and elusive catfishes of the Trichomycteridae family, endemic to the Atlantic Forest coastal drainages in Brazil. Listrura comprises 13 species with slender bodies, absent pelvic fins, and a distinct caudal-fin and caudal-peduncle morphology, while Microcambeva includes eight species with translucent bodies, typically buried in sandy substrates with exposed nasal barbels. The two genera inhabit fragile environments that are undergoing accelerated degradation, with Listrura camposae and L. nematopteryx classified as "Critically Endangered" (CR), and L. picinguabae as "Near Threatened" (NT). Microcambeva species face similar threats, with M. bendego proposed as CR and M. draco as "Endangered" (EN). Over the past two decades, collection efforts and taxonomic descriptions have expanded the diversity of these two genera, with descriptions of 11 species of Listrura and seven of Microcambeva species in that period. To address gaps in genetic data for those taxa, we herein present draft version of whole-genome sequences for two Listrura species - L. nematopteryx and L. boticario - and five Microcambeva species - M. barbata, M. watu, M. jucuensis, M. bendego, and M. ribeirae. These genomic data are critical for future studies on the evolutionary history and systematics of these unique catfishes, contributing to foundational knowledge of their biodiversity.

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引用次数: 0
The Complete Genome Sequences of two Species of Stegodyphus Spiders (Araneae: Eresidae) 两种石斑蛛的完整基因组序列(Araneae: Eresidae)
Pub Date : 2024-08-08 DOI: 10.56179/001c.122353
T. J. Colston, Steven T. Cassidy, Kara J.M. Taylor, S. Pirro, Martha Haufiku, Tresia Kavili, Seth J. Eiseb, Carl N. Keiser
We present the complete genome sequences of Stegodyphus bicolor and Stegodyphus dumicola. Illumina sequencing was performed on genetic material from specimens collected in Namibia in March 2023. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.
我们展示了双色蛙(Stegodyphus bicolor)和杜氏蛙(Stegodyphus dumicola)的完整基因组序列。我们对 2023 年 3 月在纳米比亚采集的标本的遗传物质进行了 Illumina 测序。采用从头开始的方法对读数进行组装,然后进行整理。原始数据和组装数据可通过 Genbank 公开获取。
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引用次数: 0
The Complete Genome Sequences of 29 Species of Ducks (Anatidae, Anseriformes). 29 种鸭子(鸭科,鸭形目)的完整基因组序列。
Pub Date : 2024-08-01 DOI: 10.56179/001c.122134
Emily Griffith, Stacy Pirro

We present genome sequences of 29 species of ducks from 8 genera. Illumina sequencing was performed on tissue from wild-collected museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.

我们展示了 8 属 29 种鸭子的基因组序列。我们对野生采集的博物馆标本组织进行了 Illumina 测序。使用从头方法对读数进行组装,然后进行整理。原始数据和组装数据可通过 Genbank 公开获取。
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引用次数: 0
The Complete Genome Sequences of 7 Hypoplectrus species (Serranidae, Perciformes) 7 种蓑鲉(鮨科、鲈形目)的完整基因组序列
Pub Date : 2024-05-23 DOI: 10.56179/001c.117765
Arturo Acero, S. Pirro, Ricardo Betancur
Species in the genus Hypoplectrus are found primarily in coral reefs in the Caribbean Sea and the Gulf of Mexico, particularly around Florida and the Bahamas. They are a popular choice for hobbyist saltwater aquariums. Members of this genus are simultaneous hermaphrodites, as they have both male and female sexual organs at the same time as an adult. We present the genome sequences of 7 species of Hypoplectrus. Raw read data and assembled genomes are available in Genbank.
蓑鲉属的物种主要分布在加勒比海和墨西哥湾的珊瑚礁中,尤其是佛罗里达和巴哈马群岛附近。它们是业余海水水族爱好者的热门选择。该属的成员为同时雌雄同体,因为它们在成年后同时具有雄性和雌性性器官。我们展示了 7 种 Hypoplectrus 的基因组序列。原始读数数据和组装基因组可在 Genbank 中获得。
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引用次数: 0
The Complete Genome Sequences of 37 Bird Species from the Ecuadorian Andes 厄瓜多尔安第斯山脉 37 种鸟类的完整基因组序列
Pub Date : 2024-05-23 DOI: 10.56179/001c.117756
Abhimanyu Lele, Jacob R. Drucker, T. Hains, S. Pirro, John Bates, Elisa Bonaccorso
We present the complete genome sequences of 37 Ecuadorian bird species widespread throughout the tropical Andes.
我们展示了分布于热带安第斯山脉的 37 种厄瓜多尔鸟类的完整基因组序列。
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引用次数: 0
The Complete Genome Sequence of Ajuga reptans (Lamiaceae, Lamiales), Bugleweed 虫草 Ajuga reptans(灯心草科,Lamiales)的完整基因组序列
Pub Date : 2024-05-23 DOI: 10.56179/001c.117758
Toby Pirro, S. Pirro
We present the whole genome sequence of Ajuga reptans. Illumina paired-end reads were assembled by a de novo method followed by a finishing step. The raw and assembled data are publicly available via GenBank: Sequence Read Archive (SRR24502601) and assembled genome (JAUEKW000000000).
我们展示了 Ajuga reptans 的全基因组序列。Illumina成对末端读数采用从头开始的方法进行组装,然后进行整理。原始数据和组装数据可通过 GenBank 公开获取:Sequence Read Archive (SRR24502601) 和 assembled genome (JAUEKW000000000)。
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引用次数: 0
The Complete Genome Sequences of 23 Finch Species (Fringillidae, Passeriformes) 23 个雀科物种(雀形目)的完整基因组序列
Pub Date : 2024-05-21 DOI: 10.56179/001c.117726
Louise Bodt, T. Hains, Daryl Coldren, S. Pirro, John Bates, Shannon Hackett
We present complete genome sequences of 23 species of finches from 6 genera.
我们展示了 6 个属 23 种雀鸟的完整基因组序列。
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引用次数: 0
The Draft Genome Sequences of 63 Species of Catfish (Ariidae, Siluriformes) 63 种鲶鱼(鲤形目、绢鱼科)的基因组序列草案
Pub Date : 2024-05-21 DOI: 10.56179/001c.117717
Melissa M. Rincon Sandoval, S. Pirro, Ricardo Betancur
We present genome sequences of 63 species of catfish from the Ariidae family. Illumina sequencing was performed on tissue from wild-collected museum specimens. The reads were assembled using a de novo method followed by a finishing step. The raw and assembled data are publicly available via Genbank.
我们展示了鲤科 63 种鲶鱼的基因组序列。我们对野生采集的博物馆标本组织进行了 Illumina 测序。使用从头方法对读数进行组装,然后进行整理。原始数据和组装数据可通过 Genbank 公开获取。
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引用次数: 0
期刊
Biodiversity genomes
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