Shaimaa H Mallah, Azal S Waheeb, Abrar U Hassan, Masar A Awad, Ayad R Jalfan, Ashraf Y Elnaggar, Islam H El Azab, Mohamed H H Mahmoud
{"title":"利用苯并噻吩实验吸收和发射光谱设计荧光有机聚合物化学空间:机器学习探索。","authors":"Shaimaa H Mallah, Azal S Waheeb, Abrar U Hassan, Masar A Awad, Ayad R Jalfan, Ashraf Y Elnaggar, Islam H El Azab, Mohamed H H Mahmoud","doi":"10.1007/s10895-025-04155-8","DOIUrl":null,"url":null,"abstract":"<p><p>In this study, an approach to design new fluorescent organic polymers based on benzodithiophene (BDT) chromophores are presented by utilizing machine learning (ML) techniques. For this, the BDT chromophores, from the literature, along with their corresponding λ<sub>e</sub>. by using Rapid Discovery Kit (RDKit), their molecular descriptors are designed to employ ML models for predicting their λ<sub>max</sub> and λ<sub>e</sub> properties. Among the evaluated models, Linear Regression, Random Forest and Decision Tree models demonstrate the best performance, achieving R² values between 0.96 and 0.98. Their analysis of SHapley Additive exPlanations (SHAP) values reveals that the Labute Accessible Surface Area (ASA) and the number of Rotatable Bonds can be the most influential features to impact their performance. Leveraging these insights, their 5,000 new polymers are designed with their predicted λ<sub>e</sub> extending up to 987 nm. Their highest Synthetic Accessibility Likelihood Index (SALI) scores for the top 1,000 polymers reaches up to 3.21 to indicate their accessibility for synthesis. This work not only advances the understanding of BDT -based materials but can also provide a framework for designing of new fluorescent polymers.</p>","PeriodicalId":15800,"journal":{"name":"Journal of Fluorescence","volume":" ","pages":"8347-8358"},"PeriodicalIF":3.1000,"publicationDate":"2025-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Curating Benzothiophene Experimental Absorption and Emission Spectra to Design Fluorescent Organic Polymer Chemical Space: A Machine Learning Quest.\",\"authors\":\"Shaimaa H Mallah, Azal S Waheeb, Abrar U Hassan, Masar A Awad, Ayad R Jalfan, Ashraf Y Elnaggar, Islam H El Azab, Mohamed H H Mahmoud\",\"doi\":\"10.1007/s10895-025-04155-8\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>In this study, an approach to design new fluorescent organic polymers based on benzodithiophene (BDT) chromophores are presented by utilizing machine learning (ML) techniques. For this, the BDT chromophores, from the literature, along with their corresponding λ<sub>e</sub>. by using Rapid Discovery Kit (RDKit), their molecular descriptors are designed to employ ML models for predicting their λ<sub>max</sub> and λ<sub>e</sub> properties. Among the evaluated models, Linear Regression, Random Forest and Decision Tree models demonstrate the best performance, achieving R² values between 0.96 and 0.98. Their analysis of SHapley Additive exPlanations (SHAP) values reveals that the Labute Accessible Surface Area (ASA) and the number of Rotatable Bonds can be the most influential features to impact their performance. Leveraging these insights, their 5,000 new polymers are designed with their predicted λ<sub>e</sub> extending up to 987 nm. Their highest Synthetic Accessibility Likelihood Index (SALI) scores for the top 1,000 polymers reaches up to 3.21 to indicate their accessibility for synthesis. This work not only advances the understanding of BDT -based materials but can also provide a framework for designing of new fluorescent polymers.</p>\",\"PeriodicalId\":15800,\"journal\":{\"name\":\"Journal of Fluorescence\",\"volume\":\" \",\"pages\":\"8347-8358\"},\"PeriodicalIF\":3.1000,\"publicationDate\":\"2025-09-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Journal of Fluorescence\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://doi.org/10.1007/s10895-025-04155-8\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2025/2/10 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Journal of Fluorescence","FirstCategoryId":"92","ListUrlMain":"https://doi.org/10.1007/s10895-025-04155-8","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2025/2/10 0:00:00","PubModel":"Epub","JCR":"Q2","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
Curating Benzothiophene Experimental Absorption and Emission Spectra to Design Fluorescent Organic Polymer Chemical Space: A Machine Learning Quest.
In this study, an approach to design new fluorescent organic polymers based on benzodithiophene (BDT) chromophores are presented by utilizing machine learning (ML) techniques. For this, the BDT chromophores, from the literature, along with their corresponding λe. by using Rapid Discovery Kit (RDKit), their molecular descriptors are designed to employ ML models for predicting their λmax and λe properties. Among the evaluated models, Linear Regression, Random Forest and Decision Tree models demonstrate the best performance, achieving R² values between 0.96 and 0.98. Their analysis of SHapley Additive exPlanations (SHAP) values reveals that the Labute Accessible Surface Area (ASA) and the number of Rotatable Bonds can be the most influential features to impact their performance. Leveraging these insights, their 5,000 new polymers are designed with their predicted λe extending up to 987 nm. Their highest Synthetic Accessibility Likelihood Index (SALI) scores for the top 1,000 polymers reaches up to 3.21 to indicate their accessibility for synthesis. This work not only advances the understanding of BDT -based materials but can also provide a framework for designing of new fluorescent polymers.
期刊介绍:
Journal of Fluorescence is an international forum for the publication of peer-reviewed original articles that advance the practice of this established spectroscopic technique. Topics covered include advances in theory/and or data analysis, studies of the photophysics of aromatic molecules, solvent, and environmental effects, development of stationary or time-resolved measurements, advances in fluorescence microscopy, imaging, photobleaching/recovery measurements, and/or phosphorescence for studies of cell biology, chemical biology and the advanced uses of fluorescence in flow cytometry/analysis, immunology, high throughput screening/drug discovery, DNA sequencing/arrays, genomics and proteomics. Typical applications might include studies of macromolecular dynamics and conformation, intracellular chemistry, and gene expression. The journal also publishes papers that describe the synthesis and characterization of new fluorophores, particularly those displaying unique sensitivities and/or optical properties. In addition to original articles, the Journal also publishes reviews, rapid communications, short communications, letters to the editor, topical news articles, and technical and design notes.