年龄,大小和(树中的)树的分类群和瓮,从圣诞节到今天。

IF 4.7 2区 生物学 Q1 BIOLOGY Philosophical Transactions of the Royal Society B: Biological Sciences Pub Date : 2025-02-13 Epub Date: 2025-02-20 DOI:10.1098/rstb.2023.0305
Amaury Lambert
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引用次数: 0

摘要

我们在这期特刊中庆祝的由G. Udny Yule于1925年写的论文介绍了一些新奇的东西和结果,我们将详细回顾。首先,我们讨论了Yule(1925)在过去一个世纪中的主要遗产,重点是具有重尾的经验频率分布和系统发育的随机树模型。我们估计Yule的工作被对人口增长随机过程感兴趣的科学家重新发现的年份(1948年)和它开始被引用的年份(1951年,Yule去世)。我们强调了Yule工作中被忽视的方面(例如Yule过程中的Yule过程),并纠正了一些常见的错误归属(例如圣诞树)。其次,我们将Yule的结果推广到给定年龄和大小(种数)的平均属频率。我们证明了他的公式也适用于任何随机选择的属的年龄[公式:见文]和大小[公式:见文],并且这些对[公式:见文]在属之间是均匀分布和独立的。这一特性扩展到三元组[公式:见文],其中[公式:见文]是属系统发育的合并时间,即使属内的物种多样化遵循任何整数值过程,包括物种灭绝。在这个更广泛的背景下研究[公式:见文]使我们能够识别[公式:见文]具有幂律尾部分布的情况,并将其应用于urn方案。这篇文章是主题“进化的数学理论”的一部分:追溯到100年前的系统发育模型。
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Ages, sizes and (trees within) trees of taxa and of urns, from Yule to today.

The paper written in 1925 by G. Udny Yule that we celebrate in this special issue introduces several novelties and results that we recall in detail. First, we discuss Yule's (1925)main legacies over the past century, focusing on empirical frequency distributions with heavy tails and random tree models for phylogenies. We estimate the year when Yule's work was re-discovered by scientists interested in stochastic processes of population growth (1948) and the year from which it began to be cited (1951, Yule's death). We highlight overlooked aspects of Yule's work (e.g. the Yule process of Yule processes) and correct some common misattributions (e.g. the Yule tree). Second, we generalize Yule's results on the average frequency of genera of a given age and size (number of species). We show that his formula also applies to the age [Formula: see text] and size [Formula: see text] of any randomly chosen genus and that the pairs [Formula: see text] are equally distributed and independent across genera. This property extends to triples [Formula: see text], where [Formula: see text] are the coalescence times of the genus phylogeny, even when species diversification within genera follows any integer-valued process, including species extinctions. Studying [Formula: see text] in this broader context allows us to identify cases where [Formula: see text] has a power-law tail distribution, with new applications to urn schemes.This article is part of the theme issue '"A mathematical theory of evolution": phylogenetic models dating back 100 years'.

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来源期刊
CiteScore
11.80
自引率
1.60%
发文量
365
审稿时长
3 months
期刊介绍: The journal publishes topics across the life sciences. As long as the core subject lies within the biological sciences, some issues may also include content crossing into other areas such as the physical sciences, social sciences, biophysics, policy, economics etc. Issues generally sit within four broad areas (although many issues sit across these areas): Organismal, environmental and evolutionary biology Neuroscience and cognition Cellular, molecular and developmental biology Health and disease.
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