马铃薯(Solanum tuberosum L.)GST 基因家族的全基因组鉴定和抗旱功能分析。

IF 6.6 2区 医学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Antioxidants Pub Date : 2025-02-19 DOI:10.3390/antiox14020239
Ningfan Shi, Youfang Fan, Wei Zhang, Zhijia Zhang, Zhuanfang Pu, Zhongrun Li, Lijun Hu, Zhenzhen Bi, Panfeng Yao, Yuhui Liu, Zhen Liu, Jiangping Bai, Chao Sun
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引用次数: 0

摘要

谷胱甘肽s -转移酶(GSTs)通过保护作物免受氧化损伤,在作物的抗逆性中起着重要作用。本研究采用生物信息学方法对同源四倍体马铃薯品种Cooperative-88 (C88)的GST基因家族进行了全基因组鉴定和表达分析。我们在马铃薯基因组中鉴定出366个GST基因,这些基因被划分为10个亚家族。染色体图谱显示,StGSTs分布在所有12条染色体上,在3个亚家族中观察到13个串联重复事件。蛋白质序列分析鉴定出10个保守基序,其中基序1可能代表GST结构域。对StGSTs启动子区域的顺式作用元件的分析表明,它们参与了应激反应途径。RNA-seq分析显示,大多数StGSTs对干旱胁迫和DNA去甲基化处理均有响应。对16个选定的StGSTs进行定量PCR验证,发现4个成员对两种处理均表现出强烈的响应,在耐旱品种(QS9)和干旱敏感品种(ATL)之间具有不同的表达模式。烟草中的瞬时表达试验表明,这四种StGSTs增强了耐旱性,并可能通过DNA甲基化途径进行调控,但具体机制有待进一步研究。这些发现为了解干旱胁迫下马铃薯GST基因的响应及其表观遗传调控提供了理论基础。
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Genome-Wide Identification and Drought-Responsive Functional Analysis of the GST Gene Family in Potato (Solanum tuberosum L.).

Glutathione S-transferases (GSTs) play crucial roles in crop stress tolerance through protection against oxidative damage. In this study, we conducted genome-wide identification and expression analysis of the GST gene family in the autotetraploid potato cultivar Cooperative-88 (C88) using bioinformatic approaches. We identified 366 GST genes in the potato genome, which were classified into 10 subfamilies. Chromosomal mapping revealed that StGSTs were distributed across all 12 chromosomes, with 13 tandem duplication events observed in three subfamilies. Analysis of protein sequences identified 10 conserved motifs, with motif 1 potentially representing the GST domain. Analysis of cis-acting elements in the StGSTs promoter regions suggested their involvement in stress response pathways. RNA-seq analysis revealed that most StGSTs responded to both drought stress and DNA demethylation treatments. Quantitative PCR validation of 16 selected StGSTs identified four members that showed strong responses to both treatments, with distinct expression patterns between drought-tolerant (QS9) and drought-sensitive (ATL) varieties. Transient expression assays in tobacco demonstrated that these four StGSTs enhanced drought tolerance and may be regulated through DNA methylation pathways, though the precise mechanisms require further investigation. These findings provide a theoretical foundation for understanding the response and epigenetic regulation of potato GST genes under drought stress.

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来源期刊
Antioxidants
Antioxidants Biochemistry, Genetics and Molecular Biology-Physiology
CiteScore
10.60
自引率
11.40%
发文量
2123
审稿时长
16.3 days
期刊介绍: Antioxidants (ISSN 2076-3921), provides an advanced forum for studies related to the science and technology of antioxidants. It publishes research papers, reviews and communications. Our aim is to encourage scientists to publish their experimental and theoretical results in as much detail as possible. There is no restriction on the length of the papers. The full experimental details must be provided so that the results can be reproduced. Electronic files and software regarding the full details of the calculation or experimental procedure, if unable to be published in a normal way, can be deposited as supplementary electronic material.
期刊最新文献
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