IF 0.7 4区 计算机科学 Q4 COMPUTER SCIENCE, INFORMATION SYSTEMS Information Processing Letters Pub Date : 2025-02-28 DOI:10.1016/j.ipl.2025.106572
Jordan Dempsey , Leo van Iersel , Mark Jones , Norbert Zeh
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引用次数: 0

摘要

最大一致林(Maximum agreement forests)被用来衡量给定分类群上两棵或多棵系统发生树的不相似性。一致林是指通过删除边缘和抑制度数为 2 的顶点,可以从每个输入树中得到的一组树。最大一致林就是这种成分数量最少的林。我们提出了一种简单的 4 近似算法,用于计算多棵无根二叉树的最大一致林。该算法将 LP 舍入法应用于 Van Wersch 等人[13]最近对双树最大协议林问题的 ILP 表述的扩展。我们实现了与 Chen 等人[3]的算法相同的近似率,但我们的算法极其简单。我们还证明,对于任意ε>0,即使在两棵树上,基于 Van Wersch 等人的 ILP 表述的算法也无法达到 4-ε 的近似率。为此,我们证明了随着两棵输入树的大小增加,ILP 的积分差距接近 4。
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A simple 4-approximation algorithm for maximum agreement forests on multiple unrooted binary trees
Maximum agreement forests have been used as a measure of dissimilarity of two or more phylogenetic trees on a given set of taxa. An agreement forest is a set of trees that can be obtained from each of the input trees by deleting edges and suppressing degree-2 vertices. A maximum agreement forest is such a forest with the minimum number of components. We present a simple 4-approximation algorithm for computing a maximum agreement forest of multiple unrooted binary trees. This algorithm applies LP rounding to an extension of a recent ILP formulation of the maximum agreement forest problem on two trees by Van Wersch et al. [13]. We achieve the same approximation ratio as the algorithm by Chen et al. [3], but our algorithm is extremely simple. We also prove that no algorithm based on the ILP formulation by Van Wersch et al. can achieve an approximation ratio of 4ε, for any ε>0, even on two trees. To this end, we prove that the integrality gap of the ILP approaches 4 as the size of the two input trees grows.
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来源期刊
Information Processing Letters
Information Processing Letters 工程技术-计算机:信息系统
CiteScore
1.80
自引率
0.00%
发文量
70
审稿时长
7.3 months
期刊介绍: Information Processing Letters invites submission of original research articles that focus on fundamental aspects of information processing and computing. This naturally includes work in the broadly understood field of theoretical computer science; although papers in all areas of scientific inquiry will be given consideration, provided that they describe research contributions credibly motivated by applications to computing and involve rigorous methodology. High quality experimental papers that address topics of sufficiently broad interest may also be considered. Since its inception in 1971, Information Processing Letters has served as a forum for timely dissemination of short, concise and focused research contributions. Continuing with this tradition, and to expedite the reviewing process, manuscripts are generally limited in length to nine pages when they appear in print.
期刊最新文献
On the complexity of some restricted variants of Quotient Pigeon and a weak variant of Kőnig Friends-and-strangers is PSPACE-complete A simple 4-approximation algorithm for maximum agreement forests on multiple unrooted binary trees Lower bound proof for the size of BDDs representing a shifted addition Faster algorithms and a smaller kernel for Cliques or Trees Vertex Deletion
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