Maya R Frost, Brendan K Ball, Meghana Pendyala, Stephen R Douglas, Douglas K Brubaker, Deva D Chan
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We aimed to evaluate the translatability of two common murine models of post-traumatic osteoarthritis - surgical destabilization of the medial meniscus (DMM) and noninvasive anterior cruciate ligament rupture (ACLR) - to transcriptomics cartilage data from human OA outcomes.</p><p><strong>Design: </strong>Transcriptomics cartilage data of DMM and ACLR mouse and human data was acquired from Gene Expression Omnibus. TransComp-R was used to project human OA data into a mouse model (DMM or ACLR) principal component analysis space. The principal components (PCs) were regressed against human OA conditions using increasing complexity of linear regression models incorporating human demographic covariates of OA, sex, and age. Biological pathways of the mouse PCs that significantly stratified human OA and control groups were then interpreted using Gene Set Enrichment Analysis.</p><p><strong>Results: </strong>From the TransComp-R model, we identified different enriched biological pathways across DMM and ACLR models. While PCs among the DMM models revealed pathways associated with cell signaling and metabolism, ACLR PCs represented immune function and cellular pathways associated with OA condition. The immune pathways presented in the ACLR further highlighted the potential relevance of the OA pathways observed in human conditions.</p><p><strong>Conclusions: </strong>The ACLR mouse model more successfully predicted human OA conditions, particularly with the human control groups without a history of joint injury or disease. Cross-species translational approaches support the selection of preclinical models intended for therapeutic discovery and pathway analysis in humans.</p>","PeriodicalId":519960,"journal":{"name":"bioRxiv : the preprint server for biology","volume":" ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2025-02-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11888325/pdf/","citationCount":"0","resultStr":"{\"title\":\"Computational Translation of Mouse Models of Osteoarthritis Predicts Human Disease.\",\"authors\":\"Maya R Frost, Brendan K Ball, Meghana Pendyala, Stephen R Douglas, Douglas K Brubaker, Deva D Chan\",\"doi\":\"10.1101/2025.02.23.639777\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Objective: </strong>Translation of biological insights from preclinical studies to human disease is a pressing challenge in biomedical research, including in osteoarthritis. 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Biological pathways of the mouse PCs that significantly stratified human OA and control groups were then interpreted using Gene Set Enrichment Analysis.</p><p><strong>Results: </strong>From the TransComp-R model, we identified different enriched biological pathways across DMM and ACLR models. While PCs among the DMM models revealed pathways associated with cell signaling and metabolism, ACLR PCs represented immune function and cellular pathways associated with OA condition. The immune pathways presented in the ACLR further highlighted the potential relevance of the OA pathways observed in human conditions.</p><p><strong>Conclusions: </strong>The ACLR mouse model more successfully predicted human OA conditions, particularly with the human control groups without a history of joint injury or disease. 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引用次数: 0
摘要
目的:将临床前研究的生物学见解转化为人类疾病是生物医学研究的一个紧迫挑战,包括骨关节炎。可翻译成分回归(TransComp-R)是一种计算框架,以前用于合成临床前和人类OA数据,以确定预测人类疾病状况的生物学途径。我们的目的是评估两种常见的创伤后骨关节炎小鼠模型——内侧半月板手术不稳定(DMM)和无创前交叉韧带断裂(ACLR)——对人类OA结果的转录组学软骨数据的可翻译性。设计:DMM和ACLR小鼠和人的软骨转录组学数据来自Gene Expression Omnibus。使用TransComp-R将人体OA数据投影到小鼠模型(DMM或ACLR)主成分分析空间中。利用日益复杂的线性回归模型,结合OA、性别和年龄等人类人口统计协变量,将主成分(PCs)与人类OA条件进行回归。然后使用基因集富集分析(Gene Set Enrichment Analysis)解释小鼠pc对人类OA组和对照组有显著分层的生物学途径。结果:通过TransComp-R模型,我们在DMM和ACLR模型中发现了不同的富集生物学通路。DMM模型中的PCs揭示了与细胞信号传导和代谢相关的途径,而ACLR模型中的PCs则代表了与OA相关的免疫功能和细胞途径。ACLR中提出的免疫途径进一步强调了在人类条件下观察到的OA途径的潜在相关性。结论:ACLR小鼠模型更成功地预测了人类OA状况,特别是没有关节损伤或疾病史的人类对照组。跨物种转化方法支持临床前模型的选择,用于人类治疗发现和途径分析。
Computational Translation of Mouse Models of Osteoarthritis Predicts Human Disease.
Objective: Translation of biological insights from preclinical studies to human disease is a pressing challenge in biomedical research, including in osteoarthritis. Translatable Components Regression (TransComp-R) is a computational framework that has previously been used to synthesize preclinical and human OA data to identify biological pathways predictive of human disease conditions. We aimed to evaluate the translatability of two common murine models of post-traumatic osteoarthritis - surgical destabilization of the medial meniscus (DMM) and noninvasive anterior cruciate ligament rupture (ACLR) - to transcriptomics cartilage data from human OA outcomes.
Design: Transcriptomics cartilage data of DMM and ACLR mouse and human data was acquired from Gene Expression Omnibus. TransComp-R was used to project human OA data into a mouse model (DMM or ACLR) principal component analysis space. The principal components (PCs) were regressed against human OA conditions using increasing complexity of linear regression models incorporating human demographic covariates of OA, sex, and age. Biological pathways of the mouse PCs that significantly stratified human OA and control groups were then interpreted using Gene Set Enrichment Analysis.
Results: From the TransComp-R model, we identified different enriched biological pathways across DMM and ACLR models. While PCs among the DMM models revealed pathways associated with cell signaling and metabolism, ACLR PCs represented immune function and cellular pathways associated with OA condition. The immune pathways presented in the ACLR further highlighted the potential relevance of the OA pathways observed in human conditions.
Conclusions: The ACLR mouse model more successfully predicted human OA conditions, particularly with the human control groups without a history of joint injury or disease. Cross-species translational approaches support the selection of preclinical models intended for therapeutic discovery and pathway analysis in humans.