核量子效应扩大了RNA二核苷酸的构象分布

IF 2.9 3区 化学 Q3 CHEMISTRY, PHYSICAL Chemical Physics Letters Pub Date : 2025-06-16 Epub Date: 2025-03-08 DOI:10.1016/j.cplett.2025.142024
Yu Kay Law, Asia C. Sykes
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引用次数: 0

摘要

关于核量子效应如何影响氢原子以外的生物分子构象分布的研究很少。在这项工作中,我们研究了与RNA二核苷酸相关的核量子效应。我们表明,包含核量子效应导致更异质分布的构象。一些主干构象群,特别是涉及外环碳-碳键的构象群,只有在模拟中考虑了核量子效应,以及碱基堆积减少和糖皱缩的转变时才能得到。核量子效应的加入提高了模拟的共形体分布和核磁共振耦合常数之间的一致性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

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Nuclear quantum effects broaden conformer distributions of RNA dinucleotides
Few studies have been conducted on how nuclear quantum effects affect biomolecular conformer distributions beyond those involving hydrogen atoms. In this work, we studied nuclear quantum effects associated with RNA dinucleotides. We showed that inclusion of nuclear quantum effects lead to a more heterogeneous distribution of conformers. Some backbone conformational populations particularly involving the exocyclic carbon–carbon bond are accessible only when nuclear quantum effects are included in simulations, along with a reduction in base stacking and a shift in sugar puckering. The inclusion of nuclear quantum effects improve agreement between simulated conformer distributions and NMR coupling constants.
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来源期刊
Chemical Physics Letters
Chemical Physics Letters 化学-物理:原子、分子和化学物理
CiteScore
5.70
自引率
3.60%
发文量
798
审稿时长
33 days
期刊介绍: Chemical Physics Letters has an open access mirror journal, Chemical Physics Letters: X, sharing the same aims and scope, editorial team, submission system and rigorous peer review. Chemical Physics Letters publishes brief reports on molecules, interfaces, condensed phases, nanomaterials and nanostructures, polymers, biomolecular systems, and energy conversion and storage. Criteria for publication are quality, urgency and impact. Further, experimental results reported in the journal have direct relevance for theory, and theoretical developments or non-routine computations relate directly to experiment. Manuscripts must satisfy these criteria and should not be minor extensions of previous work.
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