IF 1.9 Q3 GENETICS & HEREDITY BMC genomic data Pub Date : 2025-03-17 DOI:10.1186/s12863-025-01310-9
Shanwen Ding, Zijun Ma, Yafei Tang, Lin Yu, Zifu He, Xiaoman She
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引用次数: 0

摘要

目的:Paenibacillus 菌属包括多种多样的革兰氏阳性细菌,具有巨大的生物技术潜力。然而,人们对台中巴氏菌的研究数据和应用案例仍知之甚少。在这项研究中,我们分离了一株台中巴杆菌(P. taichungensis)菌株 BB507,该菌株对茄属拉氏菌(Ralstonia solanacearum species complex)具有抗菌作用,并提供了其完整基因组的数据和分析:菌株BB507分离自中国广东省梅州市的松树根瘤菌,对茄属拉氏菌(Ralstonia solanacearum)具有抗菌活性。利用 Illumina NovaSeq(第二代)和 Oxford Nanopore(第三代)平台对 BB507 进行了全基因组测序。BB507 的基因组由 6,974,531 bp 的环状染色体和 352,197 bp 的环状质粒组成,共编码 6,649 个基因(平均基因长度为 950 bp)、103 个转运 RNA、2 个 sRNA 和 36 个 rRNA。预测了 3 个候选 CRISPRs、6 个基因组岛和 14 个噬菌体。细菌正交平均核苷酸同一性(OAT)和类型基因组服务器(TYGS)分析显示,BB507菌株与台中金杆菌聚为一个亚群。这些发现将为工业和农业生物技术的进一步研究提供有用的资源。
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Unveiling the complete genome sequence of Paenibacillus taichungensis: genomic features and biocontrol potential.

Objectives: The genus Paenibacillus encompasses a diverse group of Gram-positive bacteria with significant biotechnological potential. However, the research data and application cases of Paenibacillus taichungensis were still poorly understood. In this study, we isolated a P. taichungensis strain BB507, which demonstrated antibacterial effect on Ralstonia solanacearum species complex, and provided data and analysis of its complete genome.

Data description: Strain BB507 was isolated from a pine rhizosphere in Meizhou city, Guangdong province of China, and showed antibacterial activity against Ralstonia solanacearum species complex. Complete genome was sequenced using Illumina NovaSeq (second-generation) and Oxford Nanopore (third-generation) platforms. The genome of BB507 comprised of a 6,974,531 bp circular chromosome and a 352,197 bp circular plasmid, encoding a total of 6,649 gene with an average gene length of 950 bp, 103 transfer RNAs, 2 sRNAs, and 36 rRNAs. Three candidate CRISPRs, 6 genomic islands and 14 prophages were predicted. The bacterial orthologous average nucleotide identity (OAT) and the type genome server (TYGS) analysis highlighted the strain BB507 was clustered into a subgroup with P. taichungensis. antiSMASH v7.0 predicted the presence of 10 secondary metabolite gene clusters in the genome. These findings will serve as a useful resource for further research in industrial and agricultural biotechnology.

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