降解芳香族化合物的反硝化细菌的分类特征及甲粪偶氮菌和甲粪偶氮菌的描述。

B Song, M M Häggblom, J Zhou, J M Tiedje, N J Palleroni
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引用次数: 96

摘要

通过形态学和生理特征、细胞脂肪酸、DNA碱基组成、小核糖体(16S)亚基DNA序列、全细胞蛋白质图谱和基因组DNA片段化分析,以及利用杂交方法估计DNA相似性,对来自10个不同地理位置的21株能在反硝化条件下降解芳香族化合物的菌株进行了分类鉴定。收集的菌株被细分为许多不同的组。第一组由4个菌株组成,可归属于先前描述的tolulyticus Azoarcus。第二组(5株)的DNA与第一组的DNA高度退火,被认为是tolulyticus的一个基因组变体。第3组和第4组由5个菌株组成,分别代表Azoarcus toluclasticus(第3组)和Azoarcus toluclasticus(第4组)的一个新种。最后,第五群有两个菌株,对应于另一个新种Azoarcus toluvorans。除了这五组,收藏还包括五个单独的菌株,可能代表了许多不同的新物种。上述分类部分与DNA-DNA杂交(全细胞蛋白质的电泳模式和用不常切割的限制性内切酶消化总DNA后获得的片段)以外的方法的结果一致。另一方面,这些分组在细胞脂肪酸组成方面没有发现相关性。同样不幸的是,没有一组简单的易于确定的表型特性可以被定义为每个群体的特征。
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Taxonomic characterization of denitrifying bacteria that degrade aromatic compounds and description of Azoarcus toluvorans sp. nov. and Azoarcus toluclasticus sp. nov.

A taxonomic characterization of twenty-one strains capable of degrading aromatic compounds under denitrifying conditions, isolated from ten different geographical locations, was performed on the basis of general morphological and physiological characteristics, cellular fatty acids, DNA base composition, small ribosomal (16S) subunit DNA sequences, whole-cell protein patterns and genomic DNA fragmentation analysis, in addition to DNA similarity estimations using hybridization methods. The collection of strains was subdivided into a number of different groups. A first group, consisting of four strains, could be assigned to the previously described species Azoarcus tolulyticus. A second group (five strains) had DNA which reannealed highly to that of strains of the first group, and it is considered to represent a genomovar of A. tolulyticus. The third and fourth groups, composed of a total of five strains, represent a new species of Azoarcus, Azoarcus toluclasticus (group 3) and a genomovar of this species (group 4), respectively. Finally, the fifth group, with two strains, corresponds to another new species of the genus Azoarcus, Azoarcus toluvorans. In addition to these five groups, the collection includes five individual strains perhaps representing as many different new species. The above classification is partially consistent with the results of approaches other than DNA-DNA hybridization (electrophoretic patterns of whole-cell proteins and of the fragments obtained after digestion of total DNA with infrequently cutting restriction enzymes). On the other hand, no correlation of these groupings was found in terms of the cellular fatty acid composition. It is also unfortunate that no simple sets of easily determinable phenotypic properties could be defined as being characteristic of each of the groups.

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