{"title":"病毒在生物多样性中的生长模式。","authors":"Tianyi Jin, John Yin","doi":"10.1093/intbio/zyab001","DOIUrl":null,"url":null,"abstract":"<p><p>Although viruses in their natural habitats add up to less than 10% of the biomass, they contribute more than 90% of the genome sequences [1]. These viral sequences or 'viromes' encode viruses that populate the Earth's oceans [2, 3] and terrestrial environments [4, 5], where their infections impact life across diverse ecological niches and scales [6, 7], including humans [8-10]. Most viruses have yet to be isolated and cultured [11-13], and surprisingly few efforts have explored what analysis of available data might reveal about their nature. Here, we compiled and analyzed seven decades of one-step growth and other data for viruses from six major families, including their infections of archaeal, bacterial and eukaryotic hosts [14-191]. We found that the use of host cell biomass for virus production was highest for archaea at 10%, followed by bacteria at 1% and eukarya at 0.01%, highlighting the degree to which viruses of archaea and bacteria exploit their host cells. For individual host cells, the yield of virus progeny spanned a relatively narrow range (10-1000 infectious particles per cell) compared with the million-fold difference in size between the smallest and largest cells. Furthermore, healthy and infected host cells were remarkably similar in the time they needed to multiply themselves or their virus progeny. Specifically, the doubling time of healthy cells and the delay time for virus release from infected cells were not only correlated (r = 0.71, p < 10-10, n = 101); they also spanned the same range from tens of minutes to about a week. These results have implications for better understanding the growth, spread and persistence of viruses in complex natural habitats that abound with diverse hosts, including humans and their associated microbes.</p>","PeriodicalId":80,"journal":{"name":"Integrative Biology","volume":"13 2","pages":"44-59"},"PeriodicalIF":1.5000,"publicationDate":"2021-02-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1093/intbio/zyab001","citationCount":"5","resultStr":"{\"title\":\"Patterns of virus growth across the diversity of life.\",\"authors\":\"Tianyi Jin, John Yin\",\"doi\":\"10.1093/intbio/zyab001\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Although viruses in their natural habitats add up to less than 10% of the biomass, they contribute more than 90% of the genome sequences [1]. 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引用次数: 5
摘要
虽然病毒在其自然栖息地的生物量加起来不到10%,但它们贡献了90%以上的基因组序列[1]。这些病毒序列或“病毒组”编码的病毒遍布地球的海洋[2,3]和陆地环境[4,5],它们的感染影响着各种生态位和规模的生命[6,7],包括人类[8-10]。大多数病毒还没有被分离和培养出来[11-13],令人惊讶的是,很少有人探索对现有数据的分析可能揭示它们的性质。在这里,我们整理并分析了来自六大科的病毒70年的一步生长和其他数据,包括它们对古细菌、细菌和真核宿主的感染[14-191]。我们发现,古细菌对宿主细胞生物量的利用最高,为10%,其次是细菌,为1%,真核生物为0.01%,这突出了古细菌和细菌的病毒利用宿主细胞的程度。对于单个宿主细胞,与最小和最大细胞之间的百万倍大小差异相比,病毒子代的产量范围相对狭窄(每个细胞10-1000个感染性颗粒)。此外,健康和受感染的宿主细胞在繁殖自身或其病毒子代所需的时间上非常相似。具体而言,健康细胞的倍增时间与病毒从感染细胞释放的延迟时间不仅相关(r = 0.71, p
Patterns of virus growth across the diversity of life.
Although viruses in their natural habitats add up to less than 10% of the biomass, they contribute more than 90% of the genome sequences [1]. These viral sequences or 'viromes' encode viruses that populate the Earth's oceans [2, 3] and terrestrial environments [4, 5], where their infections impact life across diverse ecological niches and scales [6, 7], including humans [8-10]. Most viruses have yet to be isolated and cultured [11-13], and surprisingly few efforts have explored what analysis of available data might reveal about their nature. Here, we compiled and analyzed seven decades of one-step growth and other data for viruses from six major families, including their infections of archaeal, bacterial and eukaryotic hosts [14-191]. We found that the use of host cell biomass for virus production was highest for archaea at 10%, followed by bacteria at 1% and eukarya at 0.01%, highlighting the degree to which viruses of archaea and bacteria exploit their host cells. For individual host cells, the yield of virus progeny spanned a relatively narrow range (10-1000 infectious particles per cell) compared with the million-fold difference in size between the smallest and largest cells. Furthermore, healthy and infected host cells were remarkably similar in the time they needed to multiply themselves or their virus progeny. Specifically, the doubling time of healthy cells and the delay time for virus release from infected cells were not only correlated (r = 0.71, p < 10-10, n = 101); they also spanned the same range from tens of minutes to about a week. These results have implications for better understanding the growth, spread and persistence of viruses in complex natural habitats that abound with diverse hosts, including humans and their associated microbes.
期刊介绍:
Integrative Biology publishes original biological research based on innovative experimental and theoretical methodologies that answer biological questions. The journal is multi- and inter-disciplinary, calling upon expertise and technologies from the physical sciences, engineering, computation, imaging, and mathematics to address critical questions in biological systems.
Research using experimental or computational quantitative technologies to characterise biological systems at the molecular, cellular, tissue and population levels is welcomed. Of particular interest are submissions contributing to quantitative understanding of how component properties at one level in the dimensional scale (nano to micro) determine system behaviour at a higher level of complexity.
Studies of synthetic systems, whether used to elucidate fundamental principles of biological function or as the basis for novel applications are also of interest.