可视化柔韧性在分子分辨率:分析异质性在单粒子电子显微镜重建。

Andres E Leschziner, Eva Nogales
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引用次数: 108

摘要

越来越清楚的是,许多大分子本质上是柔性的,并且在溶液中以多种构象存在。玻璃化样品的单粒子重建(低温电子显微镜,或低温电子显微镜)是独特的定位,以可视化这种构象的灵活性在其原生状态。尽管在低温电镜单粒子分析中,异质性仍然是一个重大挑战,但最近在该领域的努力表明,未来将有可能在常规基础上挖掘这一丰富的生物信息来源。在本文中,我们回顾了一些相对较新的和普遍适用的方法背后的基本原理,这些方法显示出特别有希望作为分析大分子灵活性的工具。我们还讨论了它们最近在生物学问题上的一些应用。
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Visualizing flexibility at molecular resolution: analysis of heterogeneity in single-particle electron microscopy reconstructions.

It is becoming increasingly clear that many macromolecules are intrinsically flexible and exist in multiple conformations in solution. Single-particle reconstruction of vitrified samples (cryo-electron microscopy, or cryo-EM) is uniquely positioned to visualize this conformational flexibility in its native state. Although heterogeneity remains a significant challenge in cryo-EM single-particle analysis, recent efforts in the field point to a future where it will be possible to tap into this rich source of biological information on a routine basis. In this article, we review the basic principles behind a few relatively new and generally applicable methods that show particular promise as tools to analyze macromolecular flexibility. We also discuss some of their recent applications to problems of biological interest.

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Visualizing flexibility at molecular resolution: analysis of heterogeneity in single-particle electron microscopy reconstructions. Phase boundaries and biological membranes. Calculation of protein-ligand binding affinities. Synthetic gene circuits: design with directed evolution. Bilayer thickness and membrane protein function: an energetic perspective.
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